View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3455_low_22 (Length: 340)

Name: NF3455_low_22
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3455_low_22
NF3455_low_22
[»] chr1 (11 HSPs)
chr1 (146-324)||(41987707-41987886)
chr1 (31-149)||(41987921-41988039)
chr1 (31-148)||(41985205-41985322)
chr1 (31-99)||(5031741-5031809)
chr1 (31-99)||(17983263-17983331)
chr1 (31-99)||(20607553-20607621)
chr1 (31-104)||(3820306-3820379)
chr1 (31-99)||(5757802-5757870)
chr1 (31-102)||(6073242-6073313)
chr1 (31-102)||(20610821-20610892)
chr1 (235-291)||(41985093-41985149)
[»] chr3 (10 HSPs)
chr3 (31-109)||(31604690-31604768)
chr3 (31-105)||(52044098-52044172)
chr3 (31-99)||(27481708-27481776)
chr3 (31-99)||(39623993-39624061)
chr3 (31-99)||(41665431-41665499)
chr3 (31-99)||(48394383-48394451)
chr3 (31-102)||(39918624-39918695)
chr3 (31-99)||(47667108-47667176)
chr3 (31-102)||(48402436-48402507)
chr3 (40-87)||(48413993-48414040)
[»] chr8 (6 HSPs)
chr8 (31-99)||(43731584-43731652)
chr8 (31-99)||(43748330-43748398)
chr8 (31-99)||(9944023-9944091)
chr8 (31-99)||(18364536-18364604)
chr8 (31-99)||(27547177-27547245)
chr8 (31-99)||(35929249-35929317)
[»] chr7 (7 HSPs)
chr7 (31-99)||(28040454-28040522)
chr7 (31-99)||(33171127-33171195)
chr7 (31-99)||(44206101-44206169)
chr7 (31-99)||(23260679-23260747)
chr7 (31-99)||(31516564-31516632)
chr7 (31-99)||(38538913-38538981)
chr7 (31-99)||(39796752-39796820)
[»] chr5 (4 HSPs)
chr5 (31-99)||(32684987-32685055)
chr5 (31-99)||(8880747-8880815)
chr5 (31-99)||(20190346-20190414)
chr5 (31-108)||(20200374-20200451)
[»] chr2 (4 HSPs)
chr2 (31-99)||(27282663-27282731)
chr2 (31-99)||(36047052-36047120)
chr2 (31-99)||(36048283-36048351)
chr2 (31-99)||(44206823-44206891)
[»] chr4 (1 HSPs)
chr4 (31-99)||(24267487-24267555)
[»] scaffold0012 (1 HSPs)
scaffold0012 (41-102)||(184933-184994)
[»] chr6 (1 HSPs)
chr6 (53-85)||(30899737-30899769)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 146 - 324
Target Start/End: Complemental strand, 41987886 - 41987707
Alignment:
Q  146 tattaatcaattcttttggccaagacttttatatcatgtcttcttgtcattgagatggcctatacttttatttacgtaatatattaacaaattaattagt 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41987886 tattaatcaattcttttggccaagacttttatatcatgtcttcttgtcattgagatggcctatacttttatttacgtaatatatgaacaaattaattagt 41987787  T
Q  246 gtaaggagaatgaaagctagtcattattatttgataatagccatctcaagaaac-aagatattcaattggttgagattat 324  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  41987786 gtaaggagaatgaaagctactcattattatttgataatagccatctcaagaaacaaagatattcaatttgttgagattat 41987707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 31 - 149
Target Start/End: Complemental strand, 41988039 - 41987921
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaaccttgttaacatttcaattcaagatcatt 130  Q
    ||||||||||||||||| |||| |||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  41988039 cgccgctgccggggatcaaacctgggtcacccgggtgacaggcgggaatacttaccactatactacaacgaccttgttgacatttcaattcaagatcatt 41987940  T
Q  131 gtattgaatcttatttatt 149  Q
    |||||||||||||||||||    
T  41987939 gtattgaatcttatttatt 41987921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 41985322 - 41985205
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaaccttgttaacatttcaattcaagatcatt 130  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||   |||||||||||||    
T  41985322 cgccgctgccggggattgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgaccttgttaagattcttattcaagatcatt 41985223  T
Q  131 gtattgaatcttatttat 148  Q
     |||||||||||||||||    
T  41985222 ctattgaatcttatttat 41985205  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 5031809 - 5031741
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5031809 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 5031741  T

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Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 17983331 - 17983263
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17983331 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 17983263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 20607621 - 20607553
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20607621 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 20607553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 3820306 - 3820379
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaacct 104  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  3820306 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacct 3820379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 5757870 - 5757802
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5757870 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 5757802  T

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Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 6073242 - 6073313
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaac 102  Q
    ||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  6073242 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggtgggaatacttaccactatactacaacaac 6073313  T

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Target: chr1; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 20610892 - 20610821
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaac 102  Q
    ||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  20610892 cgccgctgccggggatcgaacccgggtcacccgggtgacaagcgggaatacttaccactatactacaacaac 20610821  T

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Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 41985149 - 41985093
Alignment:
Q  235 aattaattagtgtaaggagaatgaaagctagtcattattatttgataatagccatct 291  Q
    ||||||||  |||||||||||||||||||||||||||| |||||||| |||||||||    
T  41985149 aattaatttttgtaaggagaatgaaagctagtcattatcatttgatagtagccatct 41985093  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 31604768 - 31604690
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaaccttgtta 109  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||    
T  31604768 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgactttgtta 31604690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 52044172 - 52044098
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaacctt 105  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  52044172 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaacgacctt 52044098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 27481708 - 27481776
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  27481708 cgccgctgccggggatcgaacccggatcacccgcgtgacaggcgggaatacttaccactatactacaac 27481776  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 39623993 - 39624061
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39623993 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 39624061  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 41665431 - 41665499
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41665431 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 41665499  T

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Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 48394383 - 48394451
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48394383 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 48394451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 39918624 - 39918695
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaac 102  Q
    ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  39918624 cgccgttgccggggatcgaacccgggtcacccgtgtgacaggcgggaatacttaccactatactacaacaac 39918695  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 47667108 - 47667176
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||| ||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||    
T  47667108 cgccgttgccggggatcgaacccgggtcacttgcgtgacaggcgggaatacttaccactatactacaac 47667176  T

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Target: chr3; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 48402436 - 48402507
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaac 102  Q
    ||||| |||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48402436 cgccgttgccagggatcaaactcaggtcacccgcgtgacagacgggaatacttaccactatactacaacaac 48402507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 48413993 - 48414040
Alignment:
Q  40 cggggatcgaacccgggtcacccgcgtgacagacgggaatacttacca 87  Q
    |||||||| |||||| |||||||||||||||  |||||||||||||||    
T  48413993 cggggatcaaacccgagtcacccgcgtgacaagcgggaatacttacca 48414040  T

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Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 43731584 - 43731652
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43731584 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 43731652  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 43748330 - 43748398
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43748330 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 43748398  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 9944023 - 9944091
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9944023 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 9944091  T

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Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 18364604 - 18364536
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18364604 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 18364536  T

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Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 27547245 - 27547177
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27547245 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 27547177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 35929317 - 35929249
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35929317 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 35929249  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 28040454 - 28040522
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28040454 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 28040522  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 33171195 - 33171127
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33171195 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 33171127  T

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Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 44206169 - 44206101
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44206169 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 44206101  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 23260747 - 23260679
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23260747 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 23260679  T

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Target: chr7; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 31516632 - 31516564
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31516632 cgccgctgccgaggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 31516564  T

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Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 38538981 - 38538913
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38538981 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 38538913  T

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Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 39796752 - 39796820
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39796752 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 39796820  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 32685055 - 32684987
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32685055 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 32684987  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 8880815 - 8880747
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8880815 cgccgttgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 8880747  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 20190346 - 20190414
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  20190346 cgccgctgccggggatcgaacccgggtcacccacgtgacaggcgggaatacttaccactatactacaac 20190414  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 20200374 - 20200451
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaaccttgtt 108  Q
    |||||||| |||||||| |||||||||||||||| |||||| | ||||||||||||||||||||||||| || |||||    
T  20200374 cgccgctgtcggggatcaaacccgggtcacccgcatgacaggcaggaatacttaccactatactacaacgactttgtt 20200451  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 27282663 - 27282731
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27282663 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 27282731  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 36047120 - 36047052
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36047120 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 36047052  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 36048351 - 36048283
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36048351 cgccgctgccggggatcgaacccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 36048283  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 44206891 - 44206823
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  44206891 cgccgctgccggggatcgaatccgggtcacccgcgtgacaggcgggaatacttaccactatactacaac 44206823  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 24267487 - 24267555
Alignment:
Q  31 cgccgctgccggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaac 99  Q
    ||||| ||||||||||||||||||||||  ||||||||||| ||| |||||||||||||||||||||||    
T  24267487 cgccgttgccggggatcgaacccgggtcgtccgcgtgacaggcggaaatacttaccactatactacaac 24267555  T

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Target: scaffold0012 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 184994 - 184933
Alignment:
Q  41 ggggatcgaacccgggtcacccgcgtgacagacgggaatacttaccactatactacaacaac 102  Q
    |||||| |||||||| |||||||| ||||||| || ||||||||||||||||||||||||||    
T  184994 ggggattgaacccggatcacccgcatgacagatggaaatacttaccactatactacaacaac 184933  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 30899769 - 30899737
Alignment:
Q  53 cgggtcacccgcgtgacagacgggaatacttac 85  Q
    ||||||||||||||||||| |||||||||||||    
T  30899769 cgggtcacccgcgtgacaggcgggaatacttac 30899737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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