View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3455_low_25 (Length: 279)
Name: NF3455_low_25
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3455_low_25 |
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| [»] scaffold0119 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0119 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 13309 - 13049
Alignment:
| Q |
19 |
tggtgttgttagccttgctttgtttggctttggattgttgagtgctgttcttgggaaagcacccttggtgaagtcttctttgagggttttgattggtgga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13309 |
tggtgttgttagccttgctttgtttggctttggattgttgagtgctgttcttgggaaagcacccttggtgaagtcttctttgagggttttgattggtgga |
13210 |
T |
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| Q |
119 |
tggcttgctatgtctcttacttttggtttaactaagcttgtaaaccatgttgtagtttgatcattttgatcaactttaactctttctttccatggtactt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13209 |
tggcttgctatgtctcttacttttggtttaactaagcttgtaaaccatgttgtagtttgatcattttgatcaactttaaatctttctttccatggtactt |
13110 |
T |
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| Q |
219 |
aatttgtaattttattccacgtacatcttccttttgttataagataagtttagtttgatga |
279 |
Q |
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| T |
13109 |
aatttgtaattttattccacgtacatcttccttttgttataagataagtttagtttgatga |
13049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 18989 - 18729
Alignment:
| Q |
19 |
tggtgttgttagccttgctttgtttggctttggattgttgagtgctgttcttgggaaagcacccttggtgaagtcttctttgagggttttgattggtgga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18989 |
tggtgttgttagccttgctttgtttggctttggattgttgagtgctgttcttgggaaagcacccttggtgaagtcttctttgagggttttgattggtgga |
18890 |
T |
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| Q |
119 |
tggcttgctatgtctcttacttttggtttaactaagcttgtaaaccatgttgtagtttgatcattttgatcaactttaactctttctttccatggtactt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18889 |
tggcttgctatgtctcttacttttggtttaactaagcttgtaaaccatgttgtagtttgatcattttgatcaactttaaatctttctttccatggtactt |
18790 |
T |
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| Q |
219 |
aatttgtaattttattccacgtacatcttccttttgttataagataagtttagtttgatga |
279 |
Q |
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| T |
18789 |
aatttgtaattttattccacgtacatcttccttttgttataagataagtttagtttgatga |
18729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 1293285 - 1293545
Alignment:
| Q |
19 |
tggtgttgttagccttgctttgtttggctttggattgttgagtgctgttcttgggaaagcacccttggtgaagtcttctttgagggttttgattggtgga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1293285 |
tggtgttgttagccttgctttgtttggctttggattgttgagtgctgttcttgggaaagcacccttggtgaagtcttctttgagggttttgattggtgga |
1293384 |
T |
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| Q |
119 |
tggcttgctatgtctcttacttttggtttaactaagcttgtaaaccatgttgtagtttgatcattttgatcaactttaactctttctttccatggtactt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1293385 |
tggcttgctatgtctcttacttttggtttaactaagcttgtaaaccatgttgtagtttgatcattttgatcaactttaaatctttctttccatggtactt |
1293484 |
T |
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| Q |
219 |
aatttgtaattttattccacgtacatcttccttttgttataagataagtttagtttgatga |
279 |
Q |
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| T |
1293485 |
aatttgtaattttattccacgtacatcttccttttgttataagataagtttagtttgatga |
1293545 |
T |
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