View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3455_low_30 (Length: 249)
Name: NF3455_low_30
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3455_low_30 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 48605529 - 48605767
Alignment:
| Q |
11 |
cagagaatccttttataccaccaaagtgcacaccgtcgtgtaaaccagagtttaggatcacagtgtccgggactgtatcttctgagaagtattccttcaa |
110 |
Q |
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| T |
48605529 |
cagagaatccttttataccaccaaagtgtacaccgtcgtgtaaaccagagtttaggatcacagtgtccgggactgtatcttctgagaagtattccttcaa |
48605628 |
T |
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| Q |
111 |
caaattttgatacctttcatttctcagagaatccaaccctagatagttttgtgtatcattccaatgtccattgaagatgcttgtaatcctaacggtttga |
210 |
Q |
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| T |
48605629 |
caaattttgatacctttcatttctcagagaatccaaccctagatagttttgtgtatcattccaatgtccattgaagatacttgtaatcctaacggtttga |
48605728 |
T |
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| Q |
211 |
gaggggtcatttggatttgaaaagttcctgtcaaatctt |
249 |
Q |
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| T |
48605729 |
gaggggtcatttggatttgaaaagttcctgtcaaatctt |
48605767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 48611125 - 48611363
Alignment:
| Q |
11 |
cagagaatccttttataccaccaaagtgcacaccgtcgtgtaaaccagagtttaggatcacagtgtccgggactgtatcttctgagaagtattccttcaa |
110 |
Q |
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|||||||| || ||||| || |||||| |||||||| || || |||||||| | |||||||||||| || ||||| |||||||||||||||| |||||| |
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| T |
48611125 |
cagagaatgctcgtatactacgaaagtggacaccgtcatgcaagccagagttcatgatcacagtgtctggtactgtgtcttctgagaagtatttcttcaa |
48611224 |
T |
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| Q |
111 |
caaattttgatacctttcatttctcagagaatccaaccctagatagttttgtgtatcattccaatgtccattgaagatgcttgtaatcctaacggtttga |
210 |
Q |
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| T |
48611225 |
caagttttgaaagccctcatctctcagtgaatccagccctagatagttttgtgtttcattccaatgaccattgaagatgcttgtaatcctaacagtttga |
48611324 |
T |
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| Q |
211 |
gaggggtcatttggatttgaaaagttcctgtcaaatctt |
249 |
Q |
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| T |
48611325 |
gacggatcggctgggtttgaaaaattcatgtcaaatctt |
48611363 |
T |
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