View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3455_low_31 (Length: 242)
Name: NF3455_low_31
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3455_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 6435232 - 6435007
Alignment:
| Q |
2 |
atacgtaggtgtaacttaattgataacatggaaaatgatttgctatatgagaaattgtgtaactta-ttgataacatggaaaatgacttgctatatgaga |
100 |
Q |
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| T |
6435232 |
atacgtaggtgtaacttaattgataacatggaaaatgacttgctatatgagaaattgtgcaacttaattgataacatggaaaatgacttgctatatgaga |
6435133 |
T |
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| Q |
101 |
aattatctagataatgttttgtatcaaattaagttatttctatgaaatagaataannnnnnnnagtttatcatatatcccctccgctattaccaaggtta |
200 |
Q |
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| T |
6435132 |
aattatctagataatgttttgtatcaaattaagttatttctatgaaatataataattttttttagtttatcatatatcccctccgctattaccaaggtta |
6435033 |
T |
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| Q |
201 |
ttttgttcgctccacgacaggataag |
226 |
Q |
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| T |
6435032 |
tcttgttcgttccacggcaggataag |
6435007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 57 - 226
Target Start/End: Complemental strand, 29430092 - 29429922
Alignment:
| Q |
57 |
tgtgtaactta-ttgataacatggaaaatgacttgctatatgagaaattatctagataatgttttgtatcaaattaagttatttctatgaaatagaataa |
155 |
Q |
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| T |
29430092 |
tgtgtaacttaattgataacatggaaaatgacttgctaaatgagaaattatctagataatattttgtatcaaattaagttatttctatgaaatagaataa |
29429993 |
T |
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| Q |
156 |
nnnnnnnnagtttatcatatatcccctccgctattaccaaggttattttgttcgctccacgacaggataag |
226 |
Q |
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| T |
29429992 |
ttttttttggtttatcataaatcccctccgctattatcaaggttatcttgttcgctccacgacaggataag |
29429922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 29430099 - 29430044
Alignment:
| Q |
2 |
atacgtaggtgtaacttaattgataacatggaaaatgatttgctatatgagaaatt |
57 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
29430099 |
atacgtatgtgtaacttaattgataacatggaaaatgacttgctaaatgagaaatt |
29430044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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