View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3455_low_8 (Length: 588)
Name: NF3455_low_8
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3455_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Original strand, 53623508 - 53623962
Alignment:
| Q |
13 |
gagagtgtaaatagcaaaaattgaagaagatgaagagagtaacgaactgagagatttcagagagggagatactattggaaggacgaaaagtggaacagat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53623508 |
gagagtgtaaatagcaaaaattgaagaagatgaagagagtaacgaactgagagatttcagagagggagatactattggaaggacgaaaagtggaacagat |
53623607 |
T |
|
| Q |
113 |
ccagtgaagaatcggtcgagtatcttcgtaatgaaatggccatttgaatctatctgtatccaatgaatctgaacctgattttgttccttcgtaacctgat |
212 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53623608 |
ccagtgaagaatcggttgagtatcttcgtaatgaaatggccatttgaatctatctggatccaatgaatctgaacctgattttgttccttcgtaacctgat |
53623707 |
T |
|
| Q |
213 |
ttcgtttctaaattttgatcttcataatcaattgaaagcttcattgtacatgaaaatgggtatgtaaaagtgaattagaaggctaaaaaagcttgttttg |
312 |
Q |
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| T |
53623708 |
ttcgtttctaaattttgatcttcataatcaattgaaagcttcattgtacatgaaaatgggtatgtaaaagtgaattagaaggctaaaaaagcttgttttg |
53623807 |
T |
|
| Q |
313 |
attaaaggcatgaacttccagaacatgatcatttggatttgattcatgggtctttgattttattcaaaagttcaaacattttgaagagtagtaattttgt |
412 |
Q |
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| T |
53623808 |
attaaaggcatgaacttccagaacatgatcatttggatttgattcacgggtctttgattttattcaaaagttcaaacattttgaagagtagtaattttgt |
53623907 |
T |
|
| Q |
413 |
atgcattgatcctggtctttaccaatttagagaggaacaataaacatagatgagt |
467 |
Q |
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| T |
53623908 |
atgtattgatcctggtctttaccaatttagagaggaacaataaaaatagatgagt |
53623962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 321 - 467
Target Start/End: Complemental strand, 27848315 - 27848168
Alignment:
| Q |
321 |
catgaacttccagaacatgatcatttggatttgattcatgggtctttgatttta-ttcaaaagttcaaacattttgaagagtagtaattttgtatgcatt |
419 |
Q |
| |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||| |||| ||| |
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| T |
27848315 |
catgaacttccataacataatcatttggatttgattcatgggtctttgattttaattcaaaagttcaaacattttgatgaatagtaattttatatgtatt |
27848216 |
T |
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| Q |
420 |
gatcctggtctttaccaatttagagaggaacaataaacatagatgagt |
467 |
Q |
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| T |
27848215 |
gatcctggtctttaccaatttagagaggaacagtaaacatagatgagt |
27848168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 27850256 - 27850208
Alignment:
| Q |
13 |
gagagtgtaaatagcaaaaattgaagaagatgaagagagtaacgaactg |
61 |
Q |
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| T |
27850256 |
gagagtgtaaatagcaaaaattgaagaagatgaagagggtaacgaactg |
27850208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 14226726 - 14226885
Alignment:
| Q |
50 |
agtaacgaactgagagatttcagagagggagatactattggaaggacgaaaagtggaacagatccagtgaagaatcggtcgagtatcttcgtaatgaaat |
149 |
Q |
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|||||| |||||||||| ||| |||||||||| | ||||||||||||||| |||||| |||||||| ||||||||||||||||| |||||||| |||||| |
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| T |
14226726 |
agtaacaaactgagagagttcggagagggagagaatattggaaggacgaagagtggagcagatccaatgaagaatcggtcgagtgtcttcgtattgaaat |
14226825 |
T |
|
| Q |
150 |
ggccatttgaatctatctgtatccaatgaatctgaacctgattttgttccttcgtaacct |
209 |
Q |
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||||||| ||| ||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
14226826 |
ggccattcgaagctatctggatccaatgaatctgaacctgatttcgttccttcgtaacct |
14226885 |
T |
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