View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3455_low_9 (Length: 482)

Name: NF3455_low_9
Description: NF3455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3455_low_9
NF3455_low_9
[»] chr1 (3 HSPs)
chr1 (13-163)||(44928543-44928694)
chr1 (218-286)||(44928734-44928802)
chr1 (185-264)||(27895421-27895500)
[»] chr4 (1 HSPs)
chr4 (185-258)||(16403153-16403226)
[»] scaffold0015 (1 HSPs)
scaffold0015 (187-259)||(4890-4962)
[»] chr6 (1 HSPs)
chr6 (185-241)||(12177846-12177902)
[»] chr5 (2 HSPs)
chr5 (192-234)||(20143461-20143503)
chr5 (185-241)||(11879163-11879219)
[»] chr3 (1 HSPs)
chr3 (185-241)||(41736528-41736584)
[»] chr8 (1 HSPs)
chr8 (192-241)||(42747215-42747264)
[»] chr7 (1 HSPs)
chr7 (192-241)||(40752416-40752465)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 44928543 - 44928694
Alignment:
Q  13 aatattgaactcaaagaaagtaggagtaaatggtaaacattttagatatgattaatatttctaaatcacatgcttagacattaa-ttttttaaaactgat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44928543 aatattgaactcaaagaaagtaggagtaaatggtaaacattttagatatgattaatatttctaaatcacatgcttagacattaatttttttaaaactgat 44928642  T
Q  112 tttatggttccattggacagccaagtcagcggcttttaaactgaacacaatg 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44928643 tttatggttccattggacagccaagtcagcggcttttaaactgaacacaatg 44928694  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 218 - 286
Target Start/End: Original strand, 44928734 - 44928802
Alignment:
Q  218 cataaaagagcactccggaagaaagataaaaccaaaaccaagttacaaggttaaaaactaatcatggat 286  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44928734 cataaaagagcactccggaagaaagataaaaccaaaaccaagctacaaggttaaaaactaatcatggat 44928802  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 27895500 - 27895421
Alignment:
Q  185 acccaccaaaagatacagctaaaagtttggtgccataaaagagcactccggaagaaagataaaaccaaaaccaagttaca 264  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| ||||    
T  27895500 acccaccaaaaaatacagctaaaagtctggtgccataaaagagcactccggaagaaagacaaaaccaaaacaaagctaca 27895421  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 16403153 - 16403226
Alignment:
Q  185 acccaccaaaagatacagctaaaagtttggtgccataaaagagcactccggaagaaagataaaaccaaaaccaa 258  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  16403153 acccaccaaaaaatacagctaaaagtttggtgccataaaagagcactccggaagaaagacaaaacctaaaccaa 16403226  T

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Target: scaffold0015 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 4890 - 4962
Alignment:
Q  187 ccaccaaaagatacagctaaaagtttggtgccataaaagagcactccggaagaaagataaaaccaaaaccaag 259  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||    
T  4890 ccaccaaaagatacagctaaaagttttgtgccataaaagagtactccggaagaaagacaaaaccaaaaccaag 4962  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 12177846 - 12177902
Alignment:
Q  185 acccaccaaaagatacagctaaaagtttggtgccataaaagagcactccggaagaaa 241  Q
    ||||||||||| ||||||||| | || |||||||||||||||||||||| |||||||    
T  12177846 acccaccaaaaaatacagctagatgtctggtgccataaaagagcactcctgaagaaa 12177902  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 234
Target Start/End: Original strand, 20143461 - 20143503
Alignment:
Q  192 aaaagatacagctaaaagtttggtgccataaaagagcactccg 234  Q
    |||| |||||||||||||| |||||||||||||||||||||||    
T  20143461 aaaaaatacagctaaaagtctggtgccataaaagagcactccg 20143503  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 11879163 - 11879219
Alignment:
Q  185 acccaccaaaagatacagctaaaagtttggtgccataaaagagcactccggaagaaa 241  Q
    |||||| |||| ||||||||||| || |||||||||||| ||||||||  |||||||    
T  11879163 acccacaaaaaaatacagctaaatgtctggtgccataaatgagcactcatgaagaaa 11879219  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 41736528 - 41736584
Alignment:
Q  185 acccaccaaaagatacagctaaaagtttggtgccataaaagagcactccggaagaaa 241  Q
    ||||||||||| ||||||||||| || |||||| ||||| ||||||||| |||||||    
T  41736528 acccaccaaaaaatacagctaaatgtctggtgctataaatgagcactcctgaagaaa 41736584  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 42747264 - 42747215
Alignment:
Q  192 aaaagatacagctaaaagtttggtgccataaaagagcactccggaagaaa 241  Q
    |||||||||||||||| || |||||||||||| ||| ||||| |||||||    
T  42747264 aaaagatacagctaaatgtctggtgccataaatgagtactcctgaagaaa 42747215  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 40752465 - 40752416
Alignment:
Q  192 aaaagatacagctaaaagtttggtgccataaaagagcactccggaagaaa 241  Q
    |||| ||||||||||| || |||||||||||| ||||||||| |||||||    
T  40752465 aaaaaatacagctaaatgtctggtgccataaatgagcactcctgaagaaa 40752416  T

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