View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3456_high_1 (Length: 674)

Name: NF3456_high_1
Description: NF3456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3456_high_1
NF3456_high_1
[»] chr7 (1 HSPs)
chr7 (19-674)||(25125597-25126253)


Alignment Details
Target: chr7 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 19 - 674
Target Start/End: Original strand, 25125597 - 25126253
Alignment:
Q  19 cctcacacattcaagaccagctacaatattgttgattctcctaaatcatgcaacataaaacataaaaaatgcaccgcacattccgaccatctatccgcgg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25125597 cctcacacattcaagaccagctacaatattgttgattctcctaaatcatgtaacataaaacataaaaaatgcaccgcacattctgaccatctatccgcgg 25125696  T
Q  119 aaaaattcgcttatgctctaggtcataaaacagacgaggctcttcttcgaaacagtatcttcacagcctatatgcgcatacacaacctcggcaacttctt 218  Q
    ||||||  ||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25125697 aaaaatctgcttatgctctaggtcagaaaacaggcgaggctcttcttcgaaacggtatcttcacagcctatatgcgcatacacaacctcggcaacttctt 25125796  T
Q  219 gcaattgtagcatacaagcacattatttttccaaattctctctaactttcaaattaaacaggagtgtacactgtacaccaaattctgcataattctcagc 318  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25125797 gcaattgtagcatacaagcaaattatttttccaaattctctctaactttcaaattaaacaggagtgtacactgtacaccaaattctgcataattctcagc 25125896  T
Q  319 agactgccaaatctacacccccaccaattcaccctggcaccaaagaaaacagcttcacacatcattgaaatgcattactttaacttcccttctactttga 418  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25125897 agactaccaaatctacacccccaccaattcaccctggcaccaaagaaatcagcttcacacatcattgaaatgcattactttaacttcccttctactttga 25125996  T
Q  419 taggtaaaactcaaaatttggcactaatagggaacatgctagaataccatccgtcattgtacatttttctaacaaaaactaatgttttgaagtacttgaa 518  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25125997 taggtaaaactcaaaatgtggcactaatagggaacatgctagaataccatccgtcattgtacatttttctaacaaaaactaatgttttgaagtacttgaa 25126096  T
Q  519 aagagactgttgttcaactaaaaaccacgtg-aagtatcgatttcattgaatattatcccgttaaccgaaaaattcagaatacaaatgtggattggtcca 617  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25126097 aagagactgttgttcaactaaaaaccacgtgaaagtatcgctttcatttaatattatcccgttaaccgaaaaattcagaatacaaatgtggattggtcca 25126196  T
Q  618 aagcagttcaaaaactagtattcaaacacagttctaaactagtatgcaaaccactac 674  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25126197 aagcagttcaaaaactagtattcaaacacagttccaaactagtatgcaaaccactac 25126253  T

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