View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3456_high_2 (Length: 487)
Name: NF3456_high_2
Description: NF3456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3456_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 8 - 468
Target Start/End: Original strand, 36986274 - 36986734
Alignment:
| Q |
8 |
cgaagaatatcaagcatgggtttgaaaacgggttgtatcaactcgggtcggaatgacccggatgaagaagggtaagagttaccaagagcagaaagagcaa |
107 |
Q |
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| T |
36986274 |
cgaagaaaatcaagcatgggtttgaaaacgggttgtatcaactcgggtcggaatgacccggaagaagaagggtaagagttaccaagagcagaaagagcaa |
36986373 |
T |
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| Q |
108 |
tgggtgaagaaaccttgatatcattatgaagattatgtttttgtagtgatctgtaaatgtttttcatggcgggtacgaggtacttcgttgagttgtttgg |
207 |
Q |
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| T |
36986374 |
tgggtgaagaaaccttgatatcattatgaagattatgtttttgtagtgatctgtaaatgtttttcatggcgggtacgaggtatttcgttgagttgtttgg |
36986473 |
T |
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| Q |
208 |
gtcaacaaaaacttcatttccaacagcaatggcttcaataatggtgtttggttggtaagcaacgatgtttctttcgacccatgagagtgcaaaagattga |
307 |
Q |
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| T |
36986474 |
atcaacaaaaacttcatttccaacagcaatggcttctataatggtgtttggttggtaagcaacgatgtttctttcgacccatgagagtgcaaaagattga |
36986573 |
T |
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| Q |
308 |
gactttgctgcagcaaagagttgttggttgggtagatcgacagtgagtttgattttggaaccggataatgcacgtagaactgatgggtctgtgtcgtaga |
407 |
Q |
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| T |
36986574 |
gactttgctgcagcaaagagttgttggttgggtagatcgacagtgagtttgattttggaaccggataatgcacgtagaactgatgggtctgtgtcgtaga |
36986673 |
T |
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| Q |
408 |
ttttgacatgggttataccttgtgatttgaggagttgaactactttggttgctgagggtag |
468 |
Q |
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| T |
36986674 |
ttttgacatgggttataccttgtgatttgaggagttgaactactttggttgctgagggtag |
36986734 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 24773248 - 24773171
Alignment:
| Q |
166 |
gtttttcatggcgggtacgaggtacttcgttgagttgtttgggtcaacaaaaacttcatttccaacagcaatggcttc |
243 |
Q |
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| T |
24773248 |
gtttttcatggcgggtacgagatagttggtcgtgtttttcgggtctacgaaaacctcgtttccgacagcaatggcttc |
24773171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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