View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3456_high_4 (Length: 390)
Name: NF3456_high_4
Description: NF3456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3456_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 239
Target Start/End: Complemental strand, 22078006 - 22077773
Alignment:
| Q |
5 |
tgtcgaagaatattgttgtcaacataaaagtcaatgtttctataaacgtttggcaaatagacaatttatgagtttgtggaaagacataaggattcaacga |
104 |
Q |
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| T |
22078006 |
tgtcgaagagaattgttgtcaacataaa-gtcaatgtttctataatcgtttggcaaatagacaaattatgagtttgtggaaagacataaggattcaacga |
22077908 |
T |
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| Q |
105 |
gtaatacaagtctgacaaagagaagccaacaaaagtgagagtttcgtcgaaccattccatatcttccctataagcactaatagtgggaaacatgatggta |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22077907 |
gtaatacaagtctgacaaagagaagccaacaaaagtgagagtttcgtcgaaccattccatatcttccctataagcaccaatagtgggaaacatgatggta |
22077808 |
T |
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| Q |
205 |
tattaaagagatagttcaacgggatatcatgttaa |
239 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
22077807 |
tattaaagagatagttcaacgggatatcatgttaa |
22077773 |
T |
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