View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3456_high_7 (Length: 225)

Name: NF3456_high_7
Description: NF3456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3456_high_7
NF3456_high_7
[»] chr2 (6 HSPs)
chr2 (13-210)||(18579949-18580146)
chr2 (13-211)||(5848620-5848821)
chr2 (39-211)||(15745987-15746160)
chr2 (13-147)||(33171390-33171525)
chr2 (39-147)||(5509637-5509743)
chr2 (154-210)||(19051263-19051318)
[»] chr7 (5 HSPs)
chr7 (13-211)||(23040486-23040687)
chr7 (13-211)||(22910661-22910862)
chr7 (28-191)||(26754388-26754553)
chr7 (13-211)||(13596408-13596609)
chr7 (28-211)||(48858947-48859131)
[»] chr3 (6 HSPs)
chr3 (13-211)||(20684892-20685093)
chr3 (13-211)||(53580770-53580977)
chr3 (40-145)||(4135923-4136028)
chr3 (46-191)||(8726413-8726559)
chr3 (46-191)||(9078300-9078446)
chr3 (107-211)||(52586056-52586161)
[»] chr8 (5 HSPs)
chr8 (29-211)||(10259934-10260117)
chr8 (13-211)||(17834592-17834793)
chr8 (13-185)||(8783018-8783196)
chr8 (39-130)||(16912812-16912902)
chr8 (118-191)||(16912688-16912763)
[»] chr5 (2 HSPs)
chr5 (13-211)||(32296284-32296477)
chr5 (30-211)||(17237872-17238056)
[»] chr4 (1 HSPs)
chr4 (13-211)||(48026530-48026731)
[»] chr6 (1 HSPs)
chr6 (28-188)||(15609660-15609822)
[»] chr1 (6 HSPs)
chr1 (16-211)||(42131576-42131772)
chr1 (13-185)||(24428069-24428243)
chr1 (13-151)||(32922561-32922701)
chr1 (50-147)||(12970611-12970711)
chr1 (13-75)||(32109891-32109955)
chr1 (122-191)||(43896034-43896105)
[»] scaffold0913 (1 HSPs)
scaffold0913 (30-175)||(3080-3225)
[»] scaffold0898 (1 HSPs)
scaffold0898 (30-175)||(2376-2521)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 18580146 - 18579949
Alignment:
Q  13 aagaatattattttcagcattacaagatttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaagtg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| |||||||||||||||||||||    
T  18580146 aagaatattattttcagcattacaagatttatctaaggaagatgtggctttattttgttatgtgttgtggagtatatgcaaacaaagaatcaacaaagtg 18580047  T
Q  113 tggagtgaggtaattgatactcaagtttatgttgtggagcacaaaagttatgcttcatgattggcaagatgcacgtaggtttcgtatatacatcttgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18580046 tggagtgaggtaattgatactcaagtttatgttgtggagcacaaaagttatgcttcatgattggcaagatgcacgtaggtttcgtatatacatcttgt 18579949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 5848620 - 5848821
Alignment:
Q  13 aagaatattattttca--gcattacaagatttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaag 110  Q
    ||||||||||| ||||  |||||||| ||||||||||| || |||||  ||||||||| |||||||||||||||||||||||||||||||| ||||| ||    
T  5848620 aagaatattatcttcaaagcattacatgatttatctaatgacgatgcatctttattttgttgtgtgttgtggagtatatggaaacaaagaaacaacagag 5848719  T
Q  111 tgtggagtgaggtaattgatactcaagtttatgttgt--ggagcacaaaagttatgcttcatgattggcaagatgcacgtaggtttcgtatatacatctt 208  Q
    |||| | ||||||||||||| ||| ||||||||||||   |||  ||||||||||||||||||||||||||||||||| |||| || ||| |||||||||    
T  5848720 tgtgaaatgaggtaattgatgctccagtttatgttgtcgagagagcaaaagttatgcttcatgattggcaagatgcacataggatttgta-atacatctt 5848818  T
Q  209 gtg 211  Q
    |||    
T  5848819 gtg 5848821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 39 - 211
Target Start/End: Complemental strand, 15746160 - 15745987
Alignment:
Q  39 atttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaagtgtggagtgaggtaattgatactcaagt 138  Q
    |||||||||| ||||||||  ||||||||| |||||||||||||| ||||||||||||||||| |||||| |||| || |||||||||||||| | |||     
T  15746160 atttatctaatgaagatgcaactttattttgttgtgtgttgtggaatatatggaaacaaagaaacaacaacgtgtagaatgaggtaattgatattaaagc 15746061  T
Q  139 ttatgttgt--ggagcacaaaagttatgcttcatgattggcaagatgcacgtaggtttcgtatatacatcttgtg 211  Q
     ||||||||   |||  |||||  |||| |||||| |||||||||||||||||||||||||| |||| |||||||    
T  15746060 ctatgttgttgagagagcaaaaactatgtttcatgcttggcaagatgcacgtaggtttcgta-atacttcttgtg 15745987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 33171525 - 33171390
Alignment:
Q  13 aagaatattattttca--gcattacaagatttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaag 110  Q
    ||||||||||| ||||  || ||||| ||||||||||||||||||| || ||| ||||  ||||||||||||||||| || |||||||||| |||| |||    
T  33171525 aagaatattatcttcaaagccttacatgatttatctaaggaagatgtggttttgttttgctgtgtgttgtggagtatctgaaaacaaagaagcaac-aag 33171427  T
Q  111 tgtggagtgaggtaattgatactcaagtttatgttgt 147  Q
    |||||| || |||||||||||||||| ||||||||||    
T  33171426 tgtggaatggggtaattgatactcaactttatgttgt 33171390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 5509637 - 5509743
Alignment:
Q  39 atttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaagtgtggagtgaggtaattgatactcaagt 138  Q
    |||||||||||||||||||| ||||||||| |||||||||||| ||||| || |||||||||| ||  | |||||||| ||||||||| ||| |||||||    
T  5509637 atttatctaaggaagatgcgtctttattttgttgtgtgttgtgaagtatctgaaaacaaagaaaca--agagtgtggaatgaggtaatagattctcaagt 5509734  T
Q  139 ttatgttgt 147  Q
    |||||||||    
T  5509735 ttatgttgt 5509743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 19051263 - 19051318
Alignment:
Q  154 caaaagttatgcttcatgattggcaagatgcacgtaggtttcgtatatacatcttgt 210  Q
    |||||||||||||||||||||| |||||||| |||||| || ||| |||||||||||    
T  19051263 caaaagttatgcttcatgattgacaagatgctcgtaggatttgta-atacatcttgt 19051318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 23040687 - 23040486
Alignment:
Q  13 aagaatattattttca--gcattacaagatttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaag 110  Q
    ||||||||||||||||  |||||||| ||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  23040687 aagaatattattttcaaagcattacaggatttatctaatgaagatgcagctttattttgttgtgtgttgtggagtatatggaaacaaagaaacaacaaag 23040588  T
Q  111 tgtggagtgaggtaattgatactcaagtttatgttgtg--gagcacaaaagttatgcttcatgattggcaagatgcacgtaggtttcgtatatacatctt 208  Q
    |||||| ||||||||||||||||||||| |||||| ||  |||  |||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  23040587 tgtggaatgaggtaattgatactcaagtctatgttatggagagagcaaaagttatccttcatgattggcaagatgcacgtaggtttcgta-atacatctt 23040489  T
Q  209 gtg 211  Q
    |||    
T  23040488 gtg 23040486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 22910661 - 22910862
Alignment:
Q  13 aagaatattattttca--gcattacaagatttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaag 110  Q
    ||||||||||||||||  |||||||| ||||||||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  22910661 aagaatattattttcaaagcattacatgatttatctaatgaagatgcagctttattttgttgtgtgttgtggagtatatagaaacaaagaaacaacaaag 22910760  T
Q  111 tgtggagtgaggtaattgatactcaagtttatgttgtggagca--caaaagttatgcttcatgattggcaagatgcacgtaggtttcgtatatacatctt 208  Q
    |||||| ||||||||||||||||||||  ||||| ||||||    |||||  |||||||||||||||||||||||||||||||||||||| |||| ||||    
T  22910761 tgtggaatgaggtaattgatactcaagcctatgtagtggagagagcaaaaactatgcttcatgattggcaagatgcacgtaggtttcgta-atacttctt 22910859  T
Q  209 gtg 211  Q
    |||    
T  22910860 gtg 22910862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 28 - 191
Target Start/End: Original strand, 26754388 - 26754553
Alignment:
Q  28 agcattacaagatttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaagtgtggagtgaggtaatt 127  Q
    ||||||||||||||||||||| |||||||| |||||||||| |||||| |||||| |||| | |||||||||||  |||| |||||||| ||||||||||    
T  26754388 agcattacaagatttatctaaagaagatgcagctttattttgttgtgtattgtggcgtatctagaaacaaagaaataacagagtgtggaatgaggtaatt 26754487  T
Q  128 gatactcaagtttatgttgtg--gagcacaaaagttatgcttcatgattggcaagatgcacgtagg 191  Q
    |||  ||||||||||||||||  |||  ||||||||| |||||||||||| |||||||||||||||    
T  26754488 gatgatcaagtttatgttgtggagagagcaaaagttacgcttcatgattgacaagatgcacgtagg 26754553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 13596408 - 13596609
Alignment:
Q  13 aagaatattattttca--gcattacaagatttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaag 110  Q
    ||||||||||| ||||  | |||||| |||||||||||||| |||||  ||||||||| |||||||||||||| ||| ||||||||||||| ||||| ||    
T  13596408 aagaatattatcttcaaagtattacatgatttatctaaggatgatgcaactttattttgttgtgtgttgtggactatgtggaaacaaagaaacaacagag 13596507  T
Q  111 tgtggagtgaggtaattgatactcaagtttatgttgtggag-cacaaaa-gttatgcttcatgattggcaagatgcacgtaggtttcgtatatacatctt 208  Q
    |||||  ||||||||||||| ||| |||||||||||| |||  | |||| ||||||||||||||||||||||||||| ||||| || ||| |||||||||    
T  13596508 tgtgggatgaggtaattgatgctccagtttatgttgttgagagagaaaatgttatgcttcatgattggcaagatgcatgtaggatttgta-atacatctt 13596606  T
Q  209 gtg 211  Q
    |||    
T  13596607 gtg 13596609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 211
Target Start/End: Original strand, 48858947 - 48859131
Alignment:
Q  28 agcattacaagatttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaagtgtggagtgaggtaatt 127  Q
    ||||||||| ||||||||||||||||||||  |||||||| | ||||||||||||||||| || ||||||||||  |||| |  ||||| ||||||||||    
T  48858947 agcattacatgatttatctaaggaagatgcaactttatttgactgtgtgttgtggagtatttgaaaacaaagaaaaaacagatcgtggaatgaggtaatt 48859046  T
Q  128 gatactcaagtttatgttgt--ggagcacaaaagttatgcttcatgattggcaagatgcacgtaggtttcgtatatacatcttgtg 211  Q
    ||| ||||||||||||||||   |||   |||| ||||||||||||||||||| |||||| ||||| || ||| ||||||||||||    
T  48859047 gatgctcaagtttatgttgttgagagaggaaaaattatgcttcatgattggcatgatgcaagtaggatttgta-atacatcttgtg 48859131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 9e-60; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 20684892 - 20685093
Alignment:
Q  13 aagaatattattttca--gcattacaagatttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaag 110  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||  |||||||| ||||||||||||||| |||||| ||| ||||    
T  20684892 aagaatattattttcaaagcattacaagatttatctaaggaagatgcgactttattttgctgtgtgttatggagtatatggaaataaagaaacaataaag 20684991  T
Q  111 tgtggagtgaggtaattgatactcaagtttatgttgtggagca--caaaagttatgcttcatgattggcaagatgcacgtaggtttcgtatatacatctt 208  Q
    |||||| |||||||||||||| |||||||||||||||||||    |||||  |||||||||||||||||||||||||||||||||||||| |||||| ||    
T  20684992 tgtggaatgaggtaattgatattcaagtttatgttgtggagagagcaaaaactatgcttcatgattggcaagatgcacgtaggtttcgta-atacatttt 20685090  T
Q  209 gtg 211  Q
    |||    
T  20685091 gtg 20685093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 53580770 - 53580977
Alignment:
Q  13 aagaatattattttca--gcattacaagatttat------ctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatca 104  Q
    ||||||||||||||||  |||||||| |||||||      |||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||    
T  53580770 aagaatattattttcaaagcattacaggatttattattttctaatgaagatgtggctttattttgttgtgtgttgtggagtatatggaaacaaagaaaca 53580869  T
Q  105 acaaagtgtggagtgaggtaattgatactcaagtttatgttgtg--gagcacaaaagttatgcttcatgattggcaagatgcacgtaggtttcgtatata 202  Q
    |||||||||||| |||||||||||||||||||||||||||||||  |||  |||||| |||||||||||||||||||||||||||||||||||| || ||    
T  53580870 acaaagtgtggaatgaggtaattgatactcaagtttatgttgtggagagagcaaaagctatgcttcatgattggcaagatgcacgtaggtttcgcat-ta 53580968  T
Q  203 catcttgtg 211  Q
    |||||||||    
T  53580969 catcttgtg 53580977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 4135923 - 4136028
Alignment:
Q  40 tttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaagtgtggagtgaggtaattgatactcaagtt 139  Q
    ||||||||||||||||||   |||||||  |||||||||||| ||||| ||||||||||||||||||||||||| || ||||| ||||||| |||||| |    
T  4135923 tttatctaaggaagatgccattttatttggttgtgtgttgtgtagtatctggaaacaaagaatcaacaaagtgttgaatgaggaaattgatgctcaagct 4136022  T
Q  140 tatgtt 145  Q
    ||||||    
T  4136023 tatgtt 4136028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 191
Target Start/End: Original strand, 8726413 - 8726559
Alignment:
Q  46 taaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaagtgtggagtgaggtaattgatactcaagtttatgtt 145  Q
    |||||||||||||||| |||||| |||||||||||||| ||| | |||||||| || ||||  ||||| ||  ||||||||||||  ||| |||| ||||    
T  8726413 taaggaagatgcggctctattttgttgtgtgttgtggattatctagaaacaaataaacaac--agtgttgaacgaggtaattgatgttcatgtttgtgtt 8726510  T
Q  146 gtggag---cacaaaagttatgcttcatgattggcaagatgcacgtagg 191  Q
    || |||    | |||||||||||||||||| ||||||||||||||||||    
T  8726511 gttgagagaaaaaaaagttatgcttcatgactggcaagatgcacgtagg 8726559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 191
Target Start/End: Original strand, 9078300 - 9078446
Alignment:
Q  46 taaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaagtgtggagtgaggtaattgatactcaagtttatgtt 145  Q
    |||||||||||||||| |||||| |||||||||||||| ||| | |||||||| || ||||  ||||| ||  ||||||||||||  ||| |||| ||||    
T  9078300 taaggaagatgcggctctattttgttgtgtgttgtggattatctagaaacaaataaacaac--agtgttgaacgaggtaattgatgttcatgtttgtgtt 9078397  T
Q  146 gtggag---cacaaaagttatgcttcatgattggcaagatgcacgtagg 191  Q
    || |||    | |||||||||||||||||| ||||||||||||||||||    
T  9078398 gttgagagaaaaaaaagttatgcttcatgactggcaagatgcacgtagg 9078446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 52586161 - 52586056
Alignment:
Q  107 aaagtgtggagtgaggtaattgatactcaagtttatgttgtggagca--caaaagttatgcttcatgattggcaagatgcacgtaggtttcgtatataca 204  Q
    |||||||||| ||||||||||||| ||| | ||||| |||| |||    ||||||||||| || |||||||| |||||||||||||| || ||| |||||    
T  52586161 aaagtgtggaatgaggtaattgatgctccaatttatattgtcgagagagcaaaagttatgattgatgattggtaagatgcacgtaggatttgta-ataca 52586063  T
Q  205 tcttgtg 211  Q
    |||||||    
T  52586062 tcttgtg 52586056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 211
Target Start/End: Original strand, 10259934 - 10260117
Alignment:
Q  29 gcattacaagatttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaagtgtggagtgaggtaattg 128  Q
    |||||||| |||||||||||||| ||||   ||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  10259934 gcattacatgatttatctaaggacgatgtaactttattttgttctgtgttgtggagtatatggaaacaaagaaacaacaaagtgtggaatgaggtaattg 10260033  T
Q  129 atactcaagtttatgttgt--ggagcacaaaagttatgcttcatgattggcaagatgcacgtaggtttcgtatatacatcttgtg 211  Q
    || ||| ||||||||||||   |||  |||||||||||||| ||||||||||||||||||||||| || ||| ||||||||||||    
T  10260034 atcctccagtttatgttgtcgagagagcaaaagttatgctttatgattggcaagatgcacgtaggatttgta-atacatcttgtg 10260117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 17834793 - 17834592
Alignment:
Q  13 aagaatattattttca--gcattacaagatttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaag 110  Q
    ||||||||||| ||||  |||| ||| |||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| ||| | ||    
T  17834793 aagaatattatcttcaaagcatcacaggatttatctaaggacgatgcagctttattttgttgtgtgttgtggagtatatggaaacaaagaaacaagagag 17834694  T
Q  111 tgtggagtgaggtaattgatactcaagtttatgttgt--ggagcacaaaagttatgcttcatgattggcaagatgcacgtaggtttcgtatatacatctt 208  Q
    |||||| ||||||||||||| ||| ||| ||||||||   |||   |||||||||||||||||||||||||||||||| |||| || ||| |||||||||    
T  17834693 tgtggaatgaggtaattgatgctccagtgtatgttgtcgagagagtaaaagttatgcttcatgattggcaagatgcacataggatttgta-atacatctt 17834595  T
Q  209 gtg 211  Q
    |||    
T  17834594 gtg 17834592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 8783018 - 8783196
Alignment:
Q  13 aagaatattattttc--agcattacaagatttatctaaggaagatgcggctttattttat--tgtgtgttgtggagtatatggaaacaaagaatcaacaa 108  Q
    ||||||||||| |||  ||||||| |||||||||  |||||||||| ||||||||||| |  |||||| |||||||||| | ||||||||||| |||||     
T  8783018 aagaatattatcttctaagcattaaaagatttattcaaggaagatgaggctttattttttgctgtgtgctgtggagtatctagaaacaaagaaacaacag 8783117  T
Q  109 agtgtggagtgaggtaattgatactcaagtttatgttgtggagcac--aaaagttatgcttcatgattggcaagatgca 185  Q
    ||||||||  |||||||||||| ||||||||||||||||||||     ||||| |||||||||||| ||||||||||||    
T  8783118 agtgtggaaagaggtaattgatgctcaagtttatgttgtggagagagaaaaagctatgcttcatgaatggcaagatgca 8783196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 16912812 - 16912902
Alignment:
Q  39 atttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaagtgtggagtgaggtaattgat 130  Q
    ||||||||||| |||| | ||||||||||  | ||||||||| |||||| |||||||||| || ||||| |||||||| |||||||||||||    
T  16912812 atttatctaagaaagacgtggctttatttgct-gtgtgttgtagagtatctggaaacaaataaacaacatagtgtggaatgaggtaattgat 16912902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 16912763 - 16912688
Alignment:
Q  118 tgaggtaattgatactcaagtttatgttgtg--gagcacaaaagttatgcttcatgattggcaagatgcacgtagg 191  Q
    ||||||||||||| |||||||||||||| ||  |||  |||||| ||||||||||||||| ||| ||||| |||||    
T  16912763 tgaggtaattgatgctcaagtttatgttatggagagagcaaaagctatgcttcatgattgacaaaatgcatgtagg 16912688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 32296477 - 32296284
Alignment:
Q  13 aagaatattattttca--gcattacaagatttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaag 110  Q
    ||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||  |||||||    
T  32296477 aagaatattattttcaaagcattacaggatttatctaaggaagatgcggctttattttgctgtgtgttgtggagtatatggaaac-aagaaataacaaag 32296379  T
Q  111 tgtggagtgaggtaattgatactcaagtttatgttgtggagcacaaaagttatgcttcatgattggcaagatgcacgtaggtttcgtatatacatcttgt 210  Q
    | | || |||||||||||| |||||||||||| |||||      ||||  |||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  32296378 tctagaatgaggtaattgagactcaagtttatattgtg-----aaaaaactatgcttcatgattggcaagatgcacataggtttcgta-atacatcttgt 32296285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 211
Target Start/End: Complemental strand, 17238056 - 17237872
Alignment:
Q  30 cattacaagatttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaagtgtggagtgaggtaattga 129  Q
    |||||||||||||||||||| | |||||  ||||||||| |||| ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||    
T  17238056 cattacaagatttatctaagaaggatgcaactttattttgttgtatgttgtggagtatatggaaacaaagaaacaacagagtgtggaatgaggtaattga 17237957  T
Q  130 tac--tcaagtttatgttgt--ggagcacaaaagttatgcttcatgattggcaagatgcacgtaggtttcgtatatacatcttgtg 211  Q
    | |  || | ||||||||||   |||  |||||||||||||||||||||| ||||||||||||||| || ||| ||||||||||||    
T  17237956 tgcgatccattttatgttgttgagagagcaaaagttatgcttcatgattgacaagatgcacgtaggatttgta-atacatcttgtg 17237872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 48026731 - 48026530
Alignment:
Q  13 aagaatattattttca--gcattacaagatttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaag 110  Q
    ||||||||||| ||||  |||||||| |||||||||||||| |||||  ||||||||| |||||||||||||||||||||||||||||||| |||| |||    
T  48026731 aagaatattatcttcaaagcattacatgatttatctaaggacgatgcatctttattttgttgtgtgttgtggagtatatggaaacaaagaaacaacgaag 48026632  T
Q  111 tgtggagtgaggtaattgatactcaagtttatgttgt--ggagcacaaaagttatgcttcatgattggcaagatgcacgtaggtttcgtatatacatctt 208  Q
    |||||| ||||||||||||| ||| | ||||||||||   |||  || |||||||| | |||||||| ||||||||||||||| || ||| |||||||||    
T  48026631 tgtggaatgaggtaattgatgctccaatttatgttgtcgagagagcataagttatggtccatgattgacaagatgcacgtaggatttgta-atacatctt 48026533  T
Q  209 gtg 211  Q
    |||    
T  48026532 gtg 48026530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 15609660 - 15609822
Alignment:
Q  28 agcattacaagatttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaagtgtggagtgaggtaatt 127  Q
    |||||||||||||||||||||||| ||| || ||||||||| ||||||||||| |||||| |||||| | |||| |||||||||||||| ||||||| ||    
T  15609660 agcattacaagatttatctaaggacgatacgactttattttgttgtgtgttgtagagtatctggaaatagagaaacaacaaagtgtggaatgaggtagtt 15609759  T
Q  128 gatactcaagtttatgttgt--ggagcacaaaagttatgcttcatgattggcaagatgcacgt 188  Q
    ||| ||||||||||||||||   |||   ||||||||||||||||||||||||||||||||||    
T  15609760 gatgctcaagtttatgttgtcgagagagtaaaagttatgcttcatgattggcaagatgcacgt 15609822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 42131576 - 42131772
Alignment:
Q  16 aatattattttca--gcattacaagatttatctaaggaa-gatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaagtg 112  Q
    |||||||||||||  | |||||| |||||||||||| || |||| |||||||||||  ||||||||||||| ||| ||||||||||||| ||||||||||    
T  42131576 aatattattttcaaagtattacatgatttatctaagaaaagatggggctttattttgatgtgtgttgtggaatatgtggaaacaaagaaacaacaaagtg 42131675  T
Q  113 tggagtgaggtaattgatactcaagtttatgttgtggagca--caaaagttatgcttcatgattggcaagatgcacgtaggtttcgtatatacatcttgt 210  Q
    |||| ||||||||||||||||||| ||||||||||||||    |||||  |||||||||||||||||   |||||||||||||| | | |||||||||||    
T  42131676 tggaatgaggtaattgatactcaattttatgttgtggagagagcaaaaactatgcttcatgattggc---atgcacgtaggttttgca-atacatcttgt 42131771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 24428243 - 24428069
Alignment:
Q  13 aagaatattattttca--gcattacaagatttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaag 110  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||| ||||||  |||||||||| || |||||||||| ||| ||||    
T  24428243 aagaatattattttcaaagcattacatgatttatctaaggaagatgcggctttattttgttgtgt--tgtggagtatctgaaaacaaagaaacaataaag 24428146  T
Q  111 tgtggagtgaggtaattgatactcaagtttatgttgtg--gagcacaaaagttatgcttcatgattggcaagatgca 185  Q
    |||||| ||||||| ||||| || ||||||||||||||  ||| | ||||| |||||||||||| |  |||||||||    
T  24428145 tgtggaatgaggtagttgatgctaaagtttatgttgtggagagaataaaagctatgcttcatgactaacaagatgca 24428069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 32922561 - 32922701
Alignment:
Q  13 aagaatattattttca--gcattacaagatttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaag 110  Q
    ||||||||||| ||||  |||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||| || |||||||||| ||| | ||    
T  32922561 aagaatattatcttcaaagcattacacgatttatctaaggaagatgtgcctttattttgttgtgtgttgtggagtatttgaaaacaaagaaacaatagag 32922660  T
Q  111 tgtggagtgaggtaattgatactcaagtttatgttgtggag 151  Q
    | || | ||||||| ||||| || |||| ||||||||||||    
T  32922661 tatgaaatgaggtagttgatgcttaagtatatgttgtggag 32922701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 12970611 - 12970711
Alignment:
Q  50 gaagatgcggctttattttattgtgtgttgtggagtatatgg----aaacaaagaatcaacaaagtgtggagtgaggtaa-ttgatactcaagtttatgt 144  Q
    ||||||||| ||||||| ||||||||||||  ||||||||||    ||||||||||  ||||||||||||| |||||||| ||||| |||| || |||||    
T  12970611 gaagatgcgactttattctattgtgtgttg--gagtatatggatggaaacaaagaaataacaaagtgtggaatgaggtaatttgatgctcacgtatatgt 12970708  T
Q  145 tgt 147  Q
    |||    
T  12970709 tgt 12970711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 32109891 - 32109955
Alignment:
Q  13 aagaatattattttca--gcattacaagatttatctaaggaagatgcggctttattttattgtgt 75  Q
    ||||||||||| ||||  ||||||||||||||||| |||||||||||  ||||| ||| ||||||    
T  32109891 aagaatattatcttcaaagcattacaagatttatccaaggaagatgcaactttaatttgttgtgt 32109955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 43896034 - 43896105
Alignment:
Q  122 gtaattgatactcaagtttatgttgtggag--cacaaaagttatgcttcatgattggcaagatgcacgtagg 191  Q
    ||||||||| || ||||||||||||| |||  |||||||| ||  ||||||||||| ||||||||| |||||    
T  43896034 gtaattgatgctaaagtttatgttgttgagagcacaaaagctacacttcatgattgacaagatgcatgtagg 43896105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0913 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 175
Target Start/End: Original strand, 3080 - 3225
Alignment:
Q  30 cattacaagatttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaagtgtggagtgaggtaattga 129  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||||||| | ||||| || |||||||||| ||||| ||||||||  || ||||||||    
T  3080 cattacaagatttatctaaggaagatgtggctttatttgatt-tgtgttgcgcagtatctgaaaacaaagaaacaacagagtgtgga-agaagtaattga 3177  T
Q  130 tactcaagtttatgttgtg--gagcacaaaagttatgcttcatgattg 175  Q
    |  ||||||||||||| ||  |||  ||||||||||||||||||||||    
T  3178 ttgtcaagtttatgttttggagagatcaaaagttatgcttcatgattg 3225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0898 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 175
Target Start/End: Complemental strand, 2521 - 2376
Alignment:
Q  30 cattacaagatttatctaaggaagatgcggctttattttattgtgtgttgtggagtatatggaaacaaagaatcaacaaagtgtggagtgaggtaattga 129  Q
    ||||||||||||||||||||||||||| |||||||||| ||| ||||||| | ||||| || |||||||||| ||||| ||||||||  || ||||||||    
T  2521 cattacaagatttatctaaggaagatgtggctttatttgatt-tgtgttgcgcagtatctgaaaacaaagaaacaacagagtgtgga-agaagtaattga 2424  T
Q  130 tactcaagtttatgttgtg--gagcacaaaagttatgcttcatgattg 175  Q
    |  ||||||||||||| ||  |||  ||||||||||||||||||||||    
T  2423 ttgtcaagtttatgttttggagagatcaaaagttatgcttcatgattg 2376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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