View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3456_low_3 (Length: 443)
Name: NF3456_low_3
Description: NF3456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3456_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 13 - 437
Target Start/End: Original strand, 16897561 - 16897986
Alignment:
| Q |
13 |
gagaaaactatgtatgcaaaggaaggaagtaaacaagagaagtaccccaaatgtcctgaatgcaagatgatcatagcataaggagttgttctcgacagag |
112 |
Q |
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| T |
16897561 |
gagaaaactatgtatgcaaaggaaggaagtaaacgagagaagtaccccaaatgtcctgaatgcaagatgatcatagcataaggagttgttctcgacagag |
16897660 |
T |
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| Q |
113 |
tgaacaaggtccaatattgcctttgctgtaggatttctgttcaagtacaccgactgcatactctccaacacacccctgaaaaatgcttcacccccctaca |
212 |
Q |
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| T |
16897661 |
tgaacaaggtccaatattgcctttgctgtaggatttctgttcaagtacaccgactgcatactctccaacacacccctgaaaaatgcttcacccccctaca |
16897760 |
T |
|
| Q |
213 |
tacatagaaatcacattgacacttgagaaactcataatccaaacccctt-nnnnnnnnnntccagaacaagaccaaaaatgtgtagaacaaattctcaga |
311 |
Q |
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| T |
16897761 |
tacatagaaatcacattaacacttgagaaactcataatccaaaccccttaaaaaaaagaatccagaacaagaccaaaaatgtgtagaacaaattctcaga |
16897860 |
T |
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| Q |
312 |
ttcattatcactatcatgtttttaaataactcgcgcagaccacaacatgatccccgatagtgcggggaattgcgataaaatacaaccagcacaatctcac |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16897861 |
ttcattatcactatcatgtttttaaataactcgcgcagaccacaacatgatccccaatagtgcggggaattgcgataaaatacaaccagcacaatctcac |
16897960 |
T |
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| Q |
412 |
tcatggtcgcagagacatgaaaattt |
437 |
Q |
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| T |
16897961 |
tcatggtcgcagagacatgaaaattt |
16897986 |
T |
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