View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3456_low_6 (Length: 252)

Name: NF3456_low_6
Description: NF3456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3456_low_6
NF3456_low_6
[»] chr1 (8 HSPs)
chr1 (3-245)||(3446873-3447109)
chr1 (170-240)||(10163209-10163279)
chr1 (172-240)||(3448617-3448685)
chr1 (170-240)||(11670495-11670565)
chr1 (183-229)||(10833822-10833868)
chr1 (170-240)||(11672174-11672244)
chr1 (172-240)||(11673630-11673697)
chr1 (95-155)||(11672102-11672162)
[»] chr6 (2 HSPs)
chr6 (172-240)||(1515165-1515233)
chr6 (172-240)||(2512252-2512320)
[»] chr5 (6 HSPs)
chr5 (172-240)||(33625392-33625460)
chr5 (173-236)||(13860405-13860468)
chr5 (170-240)||(36070441-36070511)
chr5 (183-240)||(40880557-40880614)
chr5 (172-240)||(33623105-33623173)
chr5 (183-226)||(18024838-18024881)
[»] chr2 (6 HSPs)
chr2 (172-240)||(35549466-35549534)
chr2 (170-229)||(17323130-17323189)
chr2 (170-229)||(29171122-29171181)
chr2 (170-226)||(5816787-5816843)
chr2 (172-240)||(14392041-14392108)
chr2 (183-229)||(41974042-41974088)
[»] chr3 (2 HSPs)
chr3 (170-240)||(3956552-3956622)
chr3 (189-229)||(34618618-34618658)
[»] chr8 (3 HSPs)
chr8 (172-240)||(38063850-38063918)
chr8 (176-226)||(21240551-21240601)
chr8 (173-240)||(13014328-13014395)
[»] chr7 (5 HSPs)
chr7 (172-240)||(22130091-22130159)
chr7 (172-240)||(40500947-40501015)
chr7 (95-155)||(41400905-41400965)
chr7 (181-226)||(33542073-33542118)
chr7 (170-215)||(48013261-48013306)
[»] chr4 (1 HSPs)
chr4 (172-240)||(3070963-3071031)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 3446873 - 3447109
Alignment:
3 ttttctcccatgattaataatgtcaatttttgttgtacattaaggctacacaattgagatactctcatggccagcccaatatatannnnnnngcctaaag 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||        ||||||||    
3446873 ttttctcccatgattaataatgtcaatttttgttgtacattaaggctacacaattgcgatactctcatggacggcccaatatat--ttttatgcctaaag 3446970  T
103 cgaaatttgaatagaagcctttcaagtgtgtttaaagagaataagataaaattnnnnnnnnnnnnnntccataagttttctcaatggaaagtaattttat 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||              |||||||||||| || ||| |||||||||||||    
3446971 cgaaatttgaatagaagcctttcaagtgtgtttaaagagaataagacaaaatt----aaaaaaaaaatccataagttttttcgatgaaaagtaattttat 3447066  T
203 atgatgtgtgtcagacactaaataaatatgagtattttcttcg 245  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
3447067 atgatgtgtgtcagacactaaataaatatgagtattttgttcg 3447109  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 10163279 - 10163209
Alignment:
170 tccataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    ||||||||||  |||||| |||||||||| |||||||||||| ||||||||||| ||||||||||||||||    
10163279 tccataagttccctcaatcgaaagtaattctatatgatgtgtatcagacactaattaaatatgagtatttt 10163209  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 3448617 - 3448685
Alignment:
172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    ||||||||| ||||||| ||||||||| ||||||||| |||||| ||||||| ||||||||||||||||    
3448617 cataagtttcctcaatgaaaagtaattctatatgatgcgtgtcaaacactaattaaatatgagtatttt 3448685  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 11670495 - 11670565
Alignment:
170 tccataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    ||||||||||  |||||| |||| ||||||||||||||||||||| |||||||| ||||||||| ||||||    
11670495 tccataagttccctcaatcgaaaataattttatatgatgtgtgtctgacactaattaaatatgaatatttt 11670565  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 10833868 - 10833822
Alignment:
183 tcaatggaaagtaattttatatgatgtgtgtcagacactaaataaat 229  Q
    ||||| |||||||||| |||||||||||||||||| |||||||||||    
10833868 tcaatcgaaagtaattctatatgatgtgtgtcagatactaaataaat 10833822  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 11672174 - 11672244
Alignment:
170 tccataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    ||||||||||   ||||| |||| |||||||||||||||||||   |||||||| ||||||||||||||||    
11672174 tccataagttccttcaatcgaaaataattttatatgatgtgtgattgacactaattaaatatgagtatttt 11672244  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 11673630 - 11673697
Alignment:
172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    ||||||||  |||||| |||| |||||| |||||||||||||| |||||||| ||||||| ||||||||    
11673630 cataagttccctcaatcgaaaataattt-atatgatgtgtgtctgacactaattaaatataagtatttt 11673697  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 11672102 - 11672162
Alignment:
95 gcctaaagcgaaatttgaatagaagcctttcaagtgtgtttaaagagaataagataaaatt 155  Q
    |||||||||||||||| ||||||  ||||| |||||  |||| ||||||||||| ||||||    
11672102 gcctaaagcgaaatttaaatagagaccttttaagtgcatttagagagaataagacaaaatt 11672162  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 1515165 - 1515233
Alignment:
172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    |||||||| ||| ||| |||| |||||||||||||||| ||| ||||||||||||||||||||||||||    
1515165 cataagttctctaaattgaaactaattttatatgatgtatgttagacactaaataaatatgagtatttt 1515233  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 2512252 - 2512320
Alignment:
172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    ||||||||  |||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||    
2512252 cataagttccctcaatcgaaagtaattttatatgatgtgtctccgacactaattaaatatgagtatttt 2512320  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 33625392 - 33625460
Alignment:
172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    ||||||||| ||||||  ||||||||| ||||||||||  || ||||||||||||||||||||||||||    
33625392 cataagtttcctcaatcaaaagtaattatatatgatgtacgttagacactaaataaatatgagtatttt 33625460  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 13860468 - 13860405
Alignment:
173 ataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagta 236  Q
    |||||||  |||||| |||||||||||||||||||||||||| || ||||| ||||||||||||    
13860468 ataagttccctcaatcgaaagtaattttatatgatgtgtgtctgatactaattaaatatgagta 13860405  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 36070441 - 36070511
Alignment:
170 tccataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    ||||||||||| || | | ||||| |||| |||||||||||||||||||||||| |||| |||||||||||    
36070441 tccataagtttcctgagtcgaaagcaattctatatgatgtgtgtcagacactaattaaacatgagtatttt 36070511  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 40880614 - 40880557
Alignment:
183 tcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    ||||| |||||||||| |||||||||||| ||||||||||| ||||||||| ||||||    
40880614 tcaatcgaaagtaattctatatgatgtgtttcagacactaattaaatatgaatatttt 40880557  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 33623105 - 33623173
Alignment:
172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    ||||| ||| ||||||  ||||||||| ||||||||||  ||  |||||||||||||||||||||||||    
33623105 cataaatttcctcaatcaaaagtaattatatatgatgtacgtttgacactaaataaatatgagtatttt 33623173  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 18024881 - 18024838
Alignment:
183 tcaatggaaagtaattttatatgatgtgtgtcagacactaaata 226  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||    
18024881 tcaatcgaaagtaattctatatgatgtgtgttagacactaaata 18024838  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 35549466 - 35549534
Alignment:
172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    ||||||||  |||||| |||||||||| |||||||| ||||||||||||| | ||||||||||||||||    
35549466 cataagttccctcaatcgaaagtaattctatatgatttgtgtcagacactgattaaatatgagtatttt 35549534  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 17323130 - 17323189
Alignment:
170 tccataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaat 229  Q
    ||||||||||   ||||| |||||||||| ||||||||||||||||||||||||||||||    
17323130 tccataagttccttcaatcgaaagtaattctatatgatgtgtgtcagacactaaataaat 17323189  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 29171122 - 29171181
Alignment:
170 tccataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaat 229  Q
    ||||||||||   ||||| |||||||||| ||||||||||||||||||||||||||||||    
29171122 tccataagttccttcaatcgaaagtaattctatatgatgtgtgtcagacactaaataaat 29171181  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 5816843 - 5816787
Alignment:
170 tccataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaata 226  Q
    ||||||||||  ||||||  |||||||||||||||||||||||| ||||||||||||    
5816843 tccataagttccctcaatcaaaagtaattttatatgatgtgtgttagacactaaata 5816787  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 14392108 - 14392041
Alignment:
172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    ||||||||  |||||| |||||||||| |||||||||  ||| ||||||||||||||||||||||||||    
14392108 cataagttccctcaattgaaagtaattctatatgatga-tgttagacactaaataaatatgagtatttt 14392041  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 41974088 - 41974042
Alignment:
183 tcaatggaaagtaattttatatgatgtgtgtcagacactaaataaat 229  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||||||    
41974088 tcaatggaaagtaattctatatgatgtgtgtcggacaccaaataaat 41974042  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 3956552 - 3956622
Alignment:
170 tccataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    ||||||||||  |||||| |||||||||| |||||||| | ||||| ||||||| ||||||||||||||||    
3956552 tccataagttccctcaatcgaaagtaattctatatgatctttgtcaaacactaattaaatatgagtatttt 3956622  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 34618618 - 34618658
Alignment:
189 gaaagtaattttatatgatgtgtgtcagacactaaataaat 229  Q
    |||| ||||||||||||||||||||| |||||||| |||||    
34618618 gaaattaattttatatgatgtgtgtccgacactaattaaat 34618658  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 38063850 - 38063918
Alignment:
172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    ||||||||| |||||| |||||||||| || | ||||||||| ||||| ||| ||||||||||||||||    
38063850 cataagtttcctcaatcgaaagtaattctacaagatgtgtgttagacattaattaaatatgagtatttt 38063918  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 21240601 - 21240551
Alignment:
176 agttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaata 226  Q
    ||||| |||||| |||||||||| |||||||||||||| ||||||||||||    
21240601 agtttcctcaatcgaaagtaattctatatgatgtgtgtgagacactaaata 21240551  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 13014328 - 13014395
Alignment:
173 ataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    |||| |||| ||||| |||||||||| |||||||| ||| | ||| ||||| ||||||||||||||||    
13014328 ataacttttttcaatcgaaagtaattctatatgatatgtatgagatactaattaaatatgagtatttt 13014395  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 22130091 - 22130159
Alignment:
172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    ||||||||| || ||| |||| |||||||||||||||| ||||| ||||||| |||| |||||||||||    
22130091 cataagtttccttaatcgaaaataattttatatgatgtatgtcatacactaattaaacatgagtatttt 22130159  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 40501015 - 40500947
Alignment:
172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    ||||||||| || ||| |||| |||||||||||||||| ||||| ||||||| |||| |||||||||||    
40501015 cataagtttccttaatcgaaaataattttatatgatgtatgtcatacactaattaaacatgagtatttt 40500947  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 41400965 - 41400905
Alignment:
95 gcctaaagcgaaatttgaatagaagcctttcaagtgtgtttaaagagaataagataaaatt 155  Q
    |||||||||||||||| |||| |||| ||| ||||||||||| ||| ||||||| ||||||    
41400965 gcctaaagcgaaatttaaataaaagctttttaagtgtgtttagagaaaataagacaaaatt 41400905  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 33542073 - 33542118
Alignment:
181 tctcaatggaaagtaattttatatgatgtgtgtcagacactaaata 226  Q
    ||||||| |||||||||||||| ||||| |||||||||| ||||||    
33542073 tctcaattgaaagtaattttatttgatgcgtgtcagacattaaata 33542118  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 48013261 - 48013306
Alignment:
170 tccataagttttctcaatggaaagtaattttatatgatgtgtgtca 215  Q
    |||||| ||||||||||| || ||||||| ||||||||||||||||    
48013261 tccatatgttttctcaatcgatagtaattctatatgatgtgtgtca 48013306  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 3070963 - 3071031
Alignment:
172 cataagttttctcaatggaaagtaattttatatgatgtgtgtcagacactaaataaatatgagtatttt 240  Q
    ||||||||  ||||||| ||||||||| | |||||| ||  ||||||||||| ||||||||||||||||    
3070963 cataagttccctcaatgaaaagtaattatctatgatatgcttcagacactaattaaatatgagtatttt 3071031  T

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