View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3457_low_1 (Length: 1006)

Name: NF3457_low_1
Description: NF3457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3457_low_1
NF3457_low_1
[»] chr2 (3 HSPs)
chr2 (476-991)||(9115240-9115757)
chr2 (11-439)||(9114804-9115235)
chr2 (245-322)||(3596508-3596585)
[»] chr8 (1 HSPs)
chr8 (211-355)||(35661446-35661589)
[»] chr3 (2 HSPs)
chr3 (211-354)||(46170431-46170574)
chr3 (223-356)||(39018902-39019034)
[»] chr6 (4 HSPs)
chr6 (214-353)||(10040449-10040588)
chr6 (261-357)||(35019015-35019111)
chr6 (214-316)||(34392123-34392225)
chr6 (214-316)||(34480872-34480973)
[»] chr5 (1 HSPs)
chr5 (211-358)||(42943512-42943659)
[»] chr4 (4 HSPs)
chr4 (213-352)||(41702884-41703023)
chr4 (211-360)||(4513632-4513780)
chr4 (214-358)||(23613137-23613277)
chr4 (214-343)||(19504878-19505007)
[»] chr1 (3 HSPs)
chr1 (214-295)||(29525541-29525622)
chr1 (287-358)||(29525908-29525978)
chr1 (261-358)||(4641813-4641910)


Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 476 - 991
Target Start/End: Original strand, 9115240 - 9115757
Alignment:
Q  476 taggccaatatgtcacgtatatattagacagtagacacaattaatcattcaaatgtgtacttcatgtgccataaaatata---agtgcttggtaataatt 572  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||| ||||| ||||    
T  9115240 taggccaatatgtcacgtat-tattagacagtagacacaattaatcattcaaatgtgtacttcatgtgccataaaatatagtaagtgctaggtaacaatt 9115338  T
Q  573 ggatatttaacattgatctttgaccaagaaaccaatcatgtactgtacaatattttttccacaatatttatctcaaacgaacacacaaaaattgctaaca 672  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9115339 ggatatttgacattgatctttggccaagaaaccaatcatgtactgtacaatattttttccacaatatttatctcaaacgaacaaacaaaaattgctaaca 9115438  T
Q  673 atgaatctcaattgtttgctatatctacccaaaactgacaagaatttccatggctatgcatgagagaaatttgttctatagcacctaacacaaccactta 772  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  9115439 atgaatctcaattgtttgctatatctacccaaaactgacaagaatttccatggctatgcatgagagaaatttgttctctagtacctaacacaaccactta 9115538  T
Q  773 actaaagcacttttatacaaaatagaacaaatgcaactataattacaatccaaagttatcagaatttaaagcagcagccaaatgaccaaccctaaaccca 872  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9115539 actaaagcacttttatacaaaatagaacaaatgcaactataattacaatccaaagttatcagaatttaaagcagcagccaaatgaccaaccctaaaccca 9115638  T
Q  873 ttattaatccccacataatcatccctacaattatatgctttcacatgtcgagcttcaaatcccataaactttttaggacaaaaagactcagctgaaaaat 972  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9115639 ttattaatccccacataatcatccctacaattatatgctttcacatgtcgagcttcaaatcccataaactttttaggacaaaaagactcaactgaaaaat 9115738  T
Q  973 gtgaagatgcttttatagt 991  Q
    |||||||||||||||||||    
T  9115739 gtgaagatgcttttatagt 9115757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 11 - 439
Target Start/End: Original strand, 9114804 - 9115235
Alignment:
Q  11 cacagagcacaaatgataaataaataatattcatgttaaaatagaacacattgttcccttttttctcccgaaaatataactcttacttgatatatttatg 110  Q
    |||| |||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  9114804 cacatagcacaaatgataaataaataatattcatgttaaaatatagcacattgttcctttttttctccccaaaatataactcttacttgatatatttatg 9114903  T
Q  111 cggactaaacattcatttaaatctaatttaaattattcnnnnnnnnn---aagtgaatattaaagtgcaaaaacaacacacgacaacaaaatgacatccc 207  Q
    ||||||||||||| ||||||||||||||||||||||||            ||||||| ||||||||||||||||||||||||||| ||| ||||||||||    
T  9114904 cggactaaacatttatttaaatctaatttaaattattcttttttttttttaagtgaacattaaagtgcaaaaacaacacacgacagcaatatgacatccc 9115003  T
Q  208 aatggcaaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccgga 307  Q
    ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |    
T  9115004 aatggcaaagtatagtttggaccatcaaattcattactccaacttacaccacctcaatataaaccattgatatattataaatttattttaaaggaccgaa 9115103  T
Q  308 tcttatgataaaaaagatgttacaa-actgttattttagtggtgtaagttgggggcattctaatcctaaaaactcaataaatatggtgttgcacctaaaa 406  Q
    ||||||||| |||||||||||||||   |||||||||||||||||||||| ||  || ||||||||||||||||||||||||||||||||||||||||||    
T  9115104 tcttatgatgaaaaagatgttacaagggtgttattttagtggtgtaagtt-ggaacaatctaatcctaaaaactcaataaatatggtgttgcacctaaaa 9115202  T
Q  407 actaccatcaatcccttgcagcaactcagtaaa 439  Q
    |||||||||||||||||||||||||||| ||||    
T  9115203 actaccatcaatcccttgcagcaactcaataaa 9115235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 322
Target Start/End: Original strand, 3596508 - 3596585
Alignment:
Q  245 tccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatcttatgataaaaaa 322  Q
    ||||||||||||| | |||||||||  | |||||||||  |||||||||| ||||||||  ||| | |||||||||||    
T  3596508 tccaacttacaccgcttcaatataagtcgttgatatattttaaatttattctaacggacgagatttcatgataaaaaa 3596585  T

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Target: chr8 (Bit Score: 93; Significance: 9e-45; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 211 - 355
Target Start/End: Original strand, 35661446 - 35661589
Alignment:
Q  211 ggcaaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatct 310  Q
    ||||||||||||||||||||| |||||  |||| |||||||||||||||| |||||||| |||||||||||| |||||||||||||||||| ||||||||    
T  35661446 ggcaaagtatagtttggaccaccaaatacattgctccaacttacaccacc-caatataagccattgatatattataaatttattttaacggtccggatct 35661544  T
Q  311 tatgataaaaaagatgttacaaactgttattttagtggtgtaagt 355  Q
    ||||||||| ||| ||||||||  |||||||||||||||||||||    
T  35661545 tatgataaagaagctgttacaaggtgttattttagtggtgtaagt 35661589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 9e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 211 - 354
Target Start/End: Complemental strand, 46170574 - 46170431
Alignment:
Q  211 ggcaaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatct 310  Q
    ||||||||||||||||||| |||||||  |||| ||||||||||| ||  |||||||||||||||||||||| ||||||||||||||||| ||  |||||    
T  46170574 ggcaaagtatagtttggactatcaaatacattgctccaacttacatcatttcaatataaaccattgatatattataaatttattttaacgaacgagatct 46170475  T
Q  311 tatgataaaaaagatgttacaaactgttattttagtggtgtaag 354  Q
    || |||||||||||||||||||  ||||||||||||||||||||    
T  46170474 tacgataaaaaagatgttacaacgtgttattttagtggtgtaag 46170431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 223 - 356
Target Start/End: Complemental strand, 39019034 - 39018902
Alignment:
Q  223 tttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatcttatgataaaaaa 322  Q
    ||||||||| |||||  |||| ||||||||||||||| | ||| |||| |||||||||||  ||||||||||||||| |||||||||| ||||| |||||    
T  39019034 tttggaccaccaaatacattggtccaacttacaccactttaatctaaatcattgatatattttaaatttattttaacagaccggatctcatgatgaaaaa 39018935  T
Q  323 gatgttacaaactgttattttagtggtgtaagtt 356  Q
      |  ||| ||  |||||||||||||||||||||    
T  39018934 attactac-aagggttattttagtggtgtaagtt 39018902  T

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Target: chr6 (Bit Score: 84; Significance: 2e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 214 - 353
Target Start/End: Original strand, 10040449 - 10040588
Alignment:
Q  214 aaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatcttat 313  Q
    |||||||||||||||||| |||||  |||| |||||||||||||||||||| ||||  ||||||||||| || |||||||| ||||||||||||||||||    
T  10040449 aaagtatagtttggaccaccaaatagattgctccaacttacaccacctcaaaataagtcattgatatattattaatttattctaacggaccggatcttat 10040548  T
Q  314 gataaaaaagatgttacaaactgttattttagtggtgtaa 353  Q
    ||| |||||| ||||||||  |||||||||||||||||||    
T  10040549 gatgaaaaagttgttacaaggtgttattttagtggtgtaa 10040588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 261 - 357
Target Start/End: Complemental strand, 35019111 - 35019015
Alignment:
Q  261 tcaatataaaccattgatatatcataaatttattttaacggaccggatcttatgataaaaaagatgttacaaactgttattttagtggtgtaagttg 357  Q
    ||||||||| ||||||||||||  |||||||||| ||||||| ||||||||||||| |||||| || ||||||  ||||||||||||||||||||||    
T  35019111 tcaatataagccattgatatattttaaatttattctaacggatcggatcttatgatgaaaaagctgctacaaagggttattttagtggtgtaagttg 35019015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 34392123 - 34392225
Alignment:
Q  214 aaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatcttat 313  Q
    ||||| |||||||||||| ||||| ||||| || |||||||||||| |||||||||  |||||||||||  |||||||||| |||||||| |||||| ||    
T  34392123 aaagtttagtttggaccaccaaatatattgctctaacttacaccacttcaatataagtcattgatatattttaaatttattgtaacggactggatctcat 34392222  T
Q  314 gat 316  Q
    |||    
T  34392223 gat 34392225  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 214 - 316
Target Start/End: Complemental strand, 34480973 - 34480872
Alignment:
Q  214 aaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatcttat 313  Q
    ||||| |||||||||| |||||||  ||| |||||||||||||||| |||||||||  |||| ||||||  |||||||||| |||||||| |||||| ||    
T  34480973 aaagtttagtttggactatcaaatacattcttccaacttacaccacttcaatataagtcatttatatat-ttaaatttattctaacggactggatctcat 34480875  T
Q  314 gat 316  Q
    |||    
T  34480874 gat 34480872  T

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Target: chr5 (Bit Score: 84; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 211 - 358
Target Start/End: Original strand, 42943512 - 42943659
Alignment:
Q  211 ggcaaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatct 310  Q
    ||||||||||||||||||| | |||||  | || ||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||| ||| |    
T  42943512 ggcaaagtatagtttggacgaccaaatacaatgctccaacttacaccacctcaatataagccattaatatattataaatttattttaacggaccagattt 42943611  T
Q  311 tatgataaaaaagatgttacaaactgttattttagtggtgtaagttgg 358  Q
    |||||| |||||| |||||||   ||||||||||||||||||||||||    
T  42943612 tatgatgaaaaagttgttacagggtgttattttagtggtgtaagttgg 42943659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 213 - 352
Target Start/End: Complemental strand, 41703023 - 41702884
Alignment:
Q  213 caaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatctta 312  Q
    |||||||||||||||||||  ||||  |||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| |||||  | ||||||||    
T  41703023 caaagtatagtttggaccactaaatacattgttccaacttacaccacctcaatataagccattgacatattataaatttattctaacgatctggatctta 41702924  T
Q  313 tgataaaaaagatgttacaaactgttattttagtggtgta 352  Q
    ||||||||||| ||||||||  ||||||||||||||||||    
T  41702923 tgataaaaaagctgttacaaggtgttattttagtggtgta 41702884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 211 - 360
Target Start/End: Complemental strand, 4513780 - 4513632
Alignment:
Q  211 ggcaaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatct 310  Q
    |||||||||||||||| |||| |||||  |||| |||||||||||||||||||||||||  ||||||||||| ||||||||||| |||||| ||||||||    
T  4513780 ggcaaagtatagtttgaaccaccaaatacattgctccaacttacaccacctcaatataagtcattgatatattataaatttattctaacggtccggatct 4513681  T
Q  311 tatgataaaaaagatgttacaaactgttattttagtggtgtaagttgggg 360  Q
    ||||||  ||||| | ||||||  ||||||||||||||||||||||||||    
T  4513680 tatgat-gaaaagctattacaaggtgttattttagtggtgtaagttgggg 4513632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 214 - 358
Target Start/End: Original strand, 23613137 - 23613277
Alignment:
Q  214 aaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatcttat 313  Q
    |||||||||||||||||| |||||  |||| |||||||||||||||||||||||||  ||||||| |||     ||||||| |||| |||| ||||||||    
T  23613137 aaagtatagtttggaccaccaaatagattgctccaacttacaccacctcaatataagtcattgatgtat----tatttattctaacagacccgatcttat 23613232  T
Q  314 gataaaaaagatgttacaaactgttattttagtggtgtaagttgg 358  Q
    ||| |||||| ||||||||  |||||||||| |||||||||||||    
T  23613233 gatgaaaaagttgttacaaggtgttattttaatggtgtaagttgg 23613277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 214 - 343
Target Start/End: Complemental strand, 19505007 - 19504878
Alignment:
Q  214 aaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattttaacggaccggatcttat 313  Q
    ||||| ||||||  |||| |||||  |||| ||||||||||||||  | |||||||  |||||||||||  |||||||||||| ||||| | ||||||||    
T  19505007 aaagtttagtttaaaccaccaaatacattgctccaacttacaccattttaatataagtcattgatatattttaaatttattttcacggatcagatcttat 19504908  T
Q  314 gataaaaaagatgttacaaactgttatttt 343  Q
    ||| |||||| || ||||||  ||||||||    
T  19504907 gatgaaaaagctgctacaaagggttatttt 19504878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 29525541 - 29525622
Alignment:
Q  214 aaagtatagtttggaccatcaaatttattgttccaacttacaccacctcaatataaaccattgatatatcataaatttattt 295  Q
    ||||||||||||| ||||||||||  |||| ||||| |||||| ||||||||||||| ||||||||||| ||||||||||||    
T  29525541 aaagtatagtttgaaccatcaaatacattgctccaatttacactacctcaatataaatcattgatatatgataaatttattt 29525622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 287 - 358
Target Start/End: Original strand, 29525908 - 29525978
Alignment:
Q  287 aatttattttaacggaccggatcttatgataaaaaagatgttacaaactgttattttagtggtgtaagttgg 358  Q
    |||||||||||||||| | ||||||||||| |||||| ||||||||  ||||||||||||||||||||||||    
T  29525908 aatttattttaacggatcagatcttatgatgaaaaag-tgttacaaggtgttattttagtggtgtaagttgg 29525978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 358
Target Start/End: Original strand, 4641813 - 4641910
Alignment:
Q  261 tcaatataaaccattgatatatcataaatttattttaacggaccggatcttatgataaaaaagatgttacaaactgttattttagtggtgtaagttgg 358  Q
    |||||||||  |||||||||||  |||||||||| ||||||| | ||||| ||||| |||||| || |||||   ||||||||| | | |||||||||    
T  4641813 tcaatataagtcattgatatattttaaatttattctaacggatcagatctcatgatgaaaaagctgctacaaggggttattttattagcgtaagttgg 4641910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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