View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3457_low_3 (Length: 429)

Name: NF3457_low_3
Description: NF3457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3457_low_3
NF3457_low_3
[»] chr7 (38 HSPs)
chr7 (18-415)||(7877498-7877895)
chr7 (45-409)||(8590671-8591035)
chr7 (56-415)||(8602018-8602377)
chr7 (41-415)||(29577434-29577811)
chr7 (30-415)||(29581606-29581991)
chr7 (90-415)||(8382641-8382966)
chr7 (242-406)||(8581930-8582094)
chr7 (242-406)||(8538266-8538430)
chr7 (242-406)||(8545862-8546026)
chr7 (242-406)||(8570541-8570705)
chr7 (242-402)||(8636121-8636281)
chr7 (83-385)||(8585501-8585803)
chr7 (242-396)||(8576556-8576710)
chr7 (176-385)||(6789676-6789885)
chr7 (241-404)||(10494150-10494313)
chr7 (56-373)||(8609961-8610278)
chr7 (88-397)||(8628608-8628917)
chr7 (236-394)||(8647101-8647259)
chr7 (242-398)||(13333238-13333394)
chr7 (242-364)||(8559563-8559685)
chr7 (270-415)||(3147530-3147675)
chr7 (30-398)||(8659381-8659749)
chr7 (279-385)||(1301731-1301837)
chr7 (241-391)||(8667648-8667798)
chr7 (241-402)||(8671408-8671569)
chr7 (251-397)||(27830658-27830804)
chr7 (251-375)||(17260480-17260604)
chr7 (89-397)||(8654527-8654835)
chr7 (251-375)||(17268178-17268302)
chr7 (299-393)||(8017200-8017294)
chr7 (33-136)||(8538057-8538160)
chr7 (54-213)||(8559375-8559534)
chr7 (89-207)||(8636316-8636434)
chr7 (306-388)||(8640339-8640421)
chr7 (30-136)||(27830919-27831025)
chr7 (42-207)||(8667449-8667614)
chr7 (42-207)||(10494347-10494512)
chr7 (54-136)||(8545675-8545757)
[»] chr2 (12 HSPs)
chr2 (45-404)||(16661768-16662127)
chr2 (241-386)||(7542455-7542600)
chr2 (242-397)||(11999624-11999779)
chr2 (241-400)||(14703637-14703796)
chr2 (176-388)||(43625576-43625788)
chr2 (242-397)||(12245189-12245344)
chr2 (241-402)||(16657295-16657456)
chr2 (279-388)||(12234956-12235065)
chr2 (174-397)||(12258364-12258587)
chr2 (42-151)||(16657546-16657655)
chr2 (89-133)||(12234766-12234810)
chr2 (83-139)||(14703479-14703535)
[»] chr8 (3 HSPs)
chr8 (242-400)||(12528734-12528892)
chr8 (241-394)||(43745078-43745229)
chr8 (41-136)||(12528533-12528628)
[»] chr4 (8 HSPs)
chr4 (241-404)||(9335667-9335830)
chr4 (242-393)||(35132678-35132829)
chr4 (84-207)||(30775324-30775447)
chr4 (267-388)||(54396678-54396799)
chr4 (242-415)||(30775482-30775655)
chr4 (267-388)||(23587525-23587646)
chr4 (83-136)||(35132519-35132572)
chr4 (51-140)||(54396462-54396551)
[»] chr1 (4 HSPs)
chr1 (279-385)||(15595308-15595414)
chr1 (41-152)||(4678586-4678697)
chr1 (255-393)||(4678345-4678483)
chr1 (242-388)||(34466585-34466731)
[»] chr5 (2 HSPs)
chr5 (255-394)||(28220194-28220333)
chr5 (267-340)||(42555760-42555833)
[»] chr6 (3 HSPs)
chr6 (35-136)||(11133017-11133118)
chr6 (282-391)||(28910852-28910961)
chr6 (251-329)||(11170809-11170887)


Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 7877895 - 7877498
Alignment:
Q  18 ctaagggccctcgggtttccaccaatgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccaccta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7877895 ctaagggccctcgggtttccaccaatgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccaccta 7877796  T
Q  118 ggtgagtatctccggcagtagctattacatcaaagctatcatcttttagcgtgagaagagacacatcgaaagtgccaccaccaagatcaatgatgagcac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7877795 ggtgagtatctccggcagtagctattacatcaaagctatcatcttttagtgtgagaagagacacatcgaaagtgccaccaccaagatcaatgatgaacac 7877696  T
Q  218 atttcgttttccgatgttatttattctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaatt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7877695 atttcgttttccgatgttatttattctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaact 7877596  T
Q  318 gcaccggcatcttttgtggcttttcgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtgactccaaaaacttctctgc 415  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7877595 gcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccggcacagtaacaactgcattcttgacaggtgactccaaaaacttctctgc 7877498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 45 - 409
Target Start/End: Original strand, 8590671 - 8591035
Alignment:
Q  45 tccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagctatta 144  Q
    |||||||||||||||||| |||||||| |||| |||||||  | |||||||||||||||||||||||| |||||||| |||||||||| ||| ||| |||    
T  8590671 tccactttattcttcctcctaaactccttcaccaaatggtgaaccattctgttatcaaagtcctctcctcctaggtgggtatctccggaagtggctttta 8590770  T
Q  145 catcaaagctatcatcttttagcgtgagaagagacacatcgaaagtgccaccaccaagatcaatgatgagcacatttcgttttccgatgttatttattct 244  Q
    |||||||||||||| |||| || ||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||| ||  |||    
T  8590771 catcaaagctatcacctttgagtgtgagaagagacacatcaaaagtgccaccaccaagatcaaagatgaacacatttcgttttccgatgttactttctct 8590870  T
Q  245 cttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgt 344  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| | ||| |||||  |||| |||||||| || ||||| |      
T  8590871 cttttgaaggccatatgcaaggccagcggcagttggttcattaattatccgcattacattcaagccagcaatgacaccagcatctttggtagctttcctc 8590970  T
Q  345 tgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtgactccaaaaactt 409  Q
    ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  8590971 tgagaatcattaaaataagctggcacagtaacaactgcattcttgacaggtgactccaaaaactt 8591035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 56 - 415
Target Start/End: Original strand, 8602018 - 8602377
Alignment:
Q  56 cttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagctattacatcaaagcta 155  Q
    |||||| || |||||||| || || ||||||| ||||| |||||||||||||||||| || ||||| || ||||||| ||| ||  | || ||||||  |    
T  8602018 cttcctgttgaactccataacaaagtggttcaccattcggttatcaaagtcctctcctccaaggtgtgtgtctccggaagtggccttgacttcaaagaga 8602117  T
Q  156 tcatcttttagcgtgagaagagacacatcgaaagtgccaccaccaagatcaatgatgagcacatttcgttttccgatgttatttattctcttttgaaggc 255  Q
    | ||  || |  ||||||||||| ||||| ||||| ||||||||||||||||  ||||  | |||||  | | | |    |||   ||||||||||||||    
T  8602118 ttattcttaattgtgagaagagaaacatcaaaagttccaccaccaagatcaaatatgaaaatatttctctcttcaacacaattagctctcttttgaaggc 8602217  T
Q  256 catatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcatt 355  Q
    |||||||||| ||||| |||||||| ||||| ||||||||||| |||||||| || ||||| ||||| |||||||||||||||||||| |||||||||||    
T  8602218 catatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcatt 8602317  T
Q  356 gaaataagccggaacagtaacaactgcattcttgacaggtgactccaaaaacttctctgc 415  Q
     ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  8602318 aaaataagccggcacagtaacaactgcattcttgacaggtgactccagaaacttctctgc 8602377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 41 - 415
Target Start/End: Complemental strand, 29577811 - 29577434
Alignment:
Q  41 aatgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagct 140  Q
    ||||||||| || ||||||||||| |||||  |||| || ||| ||| |||| | ||||| ||||||||||| |||||||||||||| || ||||| ||     
T  29577811 aatgtccacattgttcttcctcttcaactcattcacaaagtggctcaccattttattatcgaagtcctctcctcctaggtgagtatcaccagcagtggcc 29577712  T
Q  141 attacatcaaagctatcatcttttagcgtgagaagagacacatcgaaagtgccaccaccaagatcaatgatgagcacatttcgttttccgatgtta---t 237  Q
     |||| ||||| |||||||| || || ||||||||||||||||| || ||||||||||||||||||| |||||  |||||||| ||||| |    |   |    
T  29577711 tttacttcaaaactatcatccttaagtgtgagaagagacacatcaaaggtgccaccaccaagatcaaagatgaatacatttcgctttccaacaacaaaat 29577612  T
Q  238 ttattctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggc 337  Q
    |   |||||||||||  ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||    ||||||||||| |||||    
T  29577611 tacctctcttttgaattccatatgcaagtgcagcagcagttggttcattgattatccgcattacattgaggccagcaataatgccggcatctttggtggc 29577512  T
Q  338 ttttcgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtgactccaaaaacttctctgc 415  Q
    |||||| |||||||||||||||||||| || || || |  ||||||||||| || ||| |||||||||| ||||||||    
T  29577511 ttttcgctgagaatcattgaaataagctggcactgtgatcactgcattctttacgggtaactccaaaaatttctctgc 29577434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 30 - 415
Target Start/End: Complemental strand, 29581991 - 29581606
Alignment:
Q  30 gggtttccaccaatgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctc 129  Q
    ||||| |||| ||||||||  || ||||||||||| |||||  || | || |  |||| ||||| |||||||||||||||||| |||||||||||||| |    
T  29581991 gggttcccactaatgtccaaattgttcttcctcttcaactcattcgcaaagtaattcaccattcggttatcaaagtcctctcctcctaggtgagtatcgc 29581892  T
Q  130 cggcagtagctattacatcaaagctatcatcttttagcgtgagaagagacacatcgaaagtgccaccaccaagatcaatgatgagcacatttcgttttcc 229  Q
    | ||||| ||  | || |||||  ||||||| || || ||||||||||||||||| |||||||||||||||||||||| |||||  | ||||||||||||    
T  29581891 cagcagtggccttcacttcaaacttatcatccttgagtgtgagaagagacacatcaaaagtgccaccaccaagatcaaagatgaatatatttcgttttcc 29581792  T
Q  230 gatgttatttattctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatct 329  Q
     |    |||   || ||||||||  ||||||||||| ||||||||||||||||| || ||||||| ||| ||||||||||| || ||    || ||||||    
T  29581791 aacaaaattacctcccttttgaataccatatgcaagtgcagcagcagttggttcgttgattatcctcattacattgaggccagctataatgccagcatct 29581692  T
Q  330 tttgtggcttttcgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtgactccaaaaacttctctgc 415  Q
    || ||||||||||| |||||||||||||||||||| || || ||||  ||||||||||| |||||  | |||||||| ||||||||    
T  29581691 ttggtggcttttcgctgagaatcattgaaataagcaggcacggtaatcactgcattctttacaggcaattccaaaaatttctctgc 29581606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 90 - 415
Target Start/End: Complemental strand, 8382966 - 8382641
Alignment:
Q  90 attctgttatcaaagtcctctccacctaggtgagtatctccggcagtagctattacatcaaagctatcatcttttagcgtgagaagagacacatcgaaag 189  Q
    ||||||||||| ||||| || || ||||| ||||| ||||||||||| ||  | ||| |||||  || ||  || |  ||||| ||||||||||| ||||    
T  8382966 attctgttatctaagtcttcacctcctagatgagtgtctccggcagtggccttcacaacaaagacattattcttaattgtgaggagagacacatcaaaag 8382867  T
Q  190 tgccaccaccaagatcaatgatgagcacatttcgttttccgatgttatttattctcttttgaaggccatatgcaagggcagcagcagttggttcattaat 289  Q
    | |||||||||||||||| |||||  | |||||  | | | |    |||   |||||| ||||||||||||||||| ||||| |||||||| ||||| ||    
T  8382866 ttccaccaccaagatcaaagatgaaaatatttctctcttcaagacaattagctctcttctgaaggccatatgcaagagcagcggcagttggctcattgat 8382767  T
Q  290 tatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcattgaaataagccggaacagtaacaactgcattcttg 389  Q
    ||||||||| ||||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||| || || || ||||||||| |||||| |    
T  8382766 tatccgcattacattgaggccagcaatcgcaccagcatcttttgtggctttccgttgagaatcattgaaatatgcaggcacggtaacaactacattctcg 8382667  T
Q  390 acaggtgactccaaaaacttctctgc 415  Q
    | ||||||||||||||| ||||||||    
T  8382666 ataggtgactccaaaaaattctctgc 8382641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 242 - 406
Target Start/End: Original strand, 8581930 - 8582094
Alignment:
Q  242 tctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggctttt 341  Q
    |||||||||||||||||||||||| || || ||||| |||||||| ||||||||||| |||||||| || |||||| |||| |||||||| |||||| ||    
T  8581930 tctcttttgaaggccatatgcaagagctgccgcagtcggttcattgattatccgcattacattgagacctgcaatttcacctgcatctttagtggctctt 8582029  T
Q  342 cgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtgactccaaaaa 406  Q
    ||||| |||||||| |||||||| || |||||||  ||||||||||| |||||||||||||||||    
T  8582030 cgttgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgactccaaaaa 8582094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 242 - 406
Target Start/End: Original strand, 8538266 - 8538430
Alignment:
Q  242 tctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggctttt 341  Q
    ||||||||||||||| |||||||| |||||||| || |||||||| ||||||||||| ||||||||||| |||||  |||| |||||||| |||||| ||    
T  8538266 tctcttttgaaggccgtatgcaagagcagcagctgtaggttcattgattatccgcattacattgaggccagcaatgacaccagcatctttggtggctctt 8538365  T
Q  342 cgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtgactccaaaaa 406  Q
    || || ||||||||||||||||| || || ||||  |||||||| ||||||||||||||||||||    
T  8538366 cgctgtgaatcattgaaataagcaggtactgtaatcactgcatttttgacaggtgactccaaaaa 8538430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 242 - 406
Target Start/End: Original strand, 8545862 - 8546026
Alignment:
Q  242 tctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggctttt 341  Q
    |||||||||||||||||||||||| || || ||||| |||||||| ||||||||||| ||||| || ||||||||| |||| ||||||||||||| | ||    
T  8545862 tctcttttgaaggccatatgcaagagccgccgcagtcggttcattgattatccgcatgacatttagaccggcaatttcacctgcatcttttgtggatctt 8545961  T
Q  342 cgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtgactccaaaaa 406  Q
     |||| |||||||| |||||||| || |||||||  ||||||||||| |||||||||||||||||    
T  8545962 tgttgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacaggtgactccaaaaa 8546026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 242 - 406
Target Start/End: Original strand, 8570541 - 8570705
Alignment:
Q  242 tctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggctttt 341  Q
    |||||||||||||||||||||||| || || ||||| |||||||| ||||||||||| |||||||| || |||||| |||| |||||||| |||||| ||    
T  8570541 tctcttttgaaggccatatgcaagagctgccgcagtcggttcattgattatccgcattacattgagaccagcaatttcacctgcatctttagtggctctt 8570640  T
Q  342 cgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtgactccaaaaa 406  Q
    ||||| |||||||| |||||||| || |||||||  ||||||||||| ||||| |||||||||||    
T  8570641 cgttgtgaatcattaaaataagcaggtacagtaatcactgcattcttaacaggagactccaaaaa 8570705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 242 - 402
Target Start/End: Complemental strand, 8636281 - 8636121
Alignment:
Q  242 tctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggctttt 341  Q
    |||||||||||| ||||| ||||  || ||||||||||||||||| |||||||| || ||||| ||||||||||| ||||| |||||||| |||| |||     
T  8636281 tctcttttgaagtccatacgcaaaagctgcagcagttggttcattgattatccgaattacattaaggccggcaatggcaccagcatctttggtggattta 8636182  T
Q  342 cgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtgactcca 402  Q
    || |||||||||||||||||||| || |||||||  |||||||||||||||| ||| ||||    
T  8636181 cgctgagaatcattgaaataagcgggcacagtaatgactgcattcttgacagatgattcca 8636121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 83 - 385
Target Start/End: Complemental strand, 8585803 - 8585501
Alignment:
Q  83 gttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagctattacatcaaagctatcatcttttagcgtgagaagagacaca 182  Q
    ||||||||||||||||||||||||| |||| || |||||||||| ||| || || ||| | || ||||||  |||| |||| |  ||||| |||||||||    
T  8585803 gttcaacattctgttatcaaagtcccctcccccaaggtgagtatttccagcggttgctttaacttcaaagacatcacctttaattgtgaggagagacaca 8585704  T
Q  183 tcgaaagtgccaccaccaagatcaatgatgagcacatttcgttttccgatgttatttat-tctcttttgaaggccatatgcaagggcagcagcagttggt 281  Q
    || ||||| ||||||||||||||||  |  |  | ||||||||  || ||   | |||  | | || | ||||||||||||||  || |||||||| |||    
T  8585703 tcaaaagtcccaccaccaagatcaaacacaaaaatatttcgttcacc-atcacagttacctttgttgtcaaggccatatgcaatagctgcagcagtgggt 8585605  T
Q  282 tcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcattgaaataagccggaacagtaacaactg 381  Q
    ||||| ||||||| ||||||||| ||||| ||||| ||||| |||||  | ||||||||||| |||||||||||||||||||| || ||||| |||||||    
T  8585604 tcattgattatcctcataacattaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcattgaaataagcaggcacagtcacaactg 8585505  T
Q  382 catt 385  Q
    ||||    
T  8585504 catt 8585501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 242 - 396
Target Start/End: Original strand, 8576556 - 8576710
Alignment:
Q  242 tctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggctttt 341  Q
    |||||||||||||||||| ||||| || || ||||| |||||||| |||||| |||| |||||||| || ||||||||||| |||||||| |||||| ||    
T  8576556 tctcttttgaaggccatacgcaagagctgccgcagtcggttcattgattatctgcatgacattgagaccagcaattgcacctgcatctttagtggctctt 8576655  T
Q  342 cgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtg 396  Q
    ||||| |||||||| |||||||| || |||| ||  ||||||||||| |||||||    
T  8576656 cgttgggaatcattaaaataagcaggcacagaaatcactgcattcttaacaggtg 8576710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 176 - 385
Target Start/End: Original strand, 6789676 - 6789885
Alignment:
Q  176 agacacatcgaaagtgccaccaccaagatcaatgatgagcacatttcgttttccgatgttatttattctcttttgaaggccatatgcaagggcagcagca 275  Q
    ||||||||||||||||||||||||||| || | || ||  | ||||  || |||   || |||  ||||||| | ||||||||||||||| ||||||||     
T  6789676 agacacatcgaaagtgccaccaccaaggtcgaagacgaaaatatttttttctccaccgtaattagttctcttatcaaggccatatgcaagagcagcagct 6789775  T
Q  276 gttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcattgaaataagccggaacagtaa 375  Q
    ||||||||||| ||||| || |||||||| || || ||||| ||||| ||||||   |||||||| ||||||||||||||||||||||| || |||||||    
T  6789776 gttggttcattgattattcgtataacattaagaccagcaatggcaccagcatctaaagtggctttccgttgagaatcattgaaataagcaggcacagtaa 6789875  T
Q  376 caactgcatt 385  Q
     |||||||||    
T  6789876 taactgcatt 6789885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 241 - 404
Target Start/End: Complemental strand, 10494313 - 10494150
Alignment:
Q  241 ttctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttt 340  Q
    ||||||| | ||||||||||||||  || |||||||| |||||||| |||||||| || ||||| ||||| ||||| ||||| |||||  | || || ||    
T  10494313 ttctcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatcaatagtagcctt 10494214  T
Q  341 tcgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtgactccaaa 404  Q
    |||||||||||| ||||| |||||||| ||||||||||| ||||||||||| |||||| |||||    
T  10494213 tcgttgagaatcgttgaagtaagccggcacagtaacaacagcattcttgactggtgaccccaaa 10494150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 56 - 373
Target Start/End: Original strand, 8609961 - 8610278
Alignment:
Q  56 cttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagctattacatc-aaagct 154  Q
    |||||| || |||||| |||| || || || | |||||||| ||||||||||||||| || |||||||||||||| ||||||||  | ||||| |||||     
T  8609961 cttccttttgaactccttcacaaagtgattaaccattctgtgatcaaagtcctctcctccaaggtgagtatctccagcagtagccttgacatcgaaagc- 8610059  T
Q  155 atcatcttttagcgtgagaagagacacatcgaaagtgccaccaccaagatcaatgatgagcacatttcgttttccgatgttatttattctcttttgaagg 254  Q
    ||  | ||| |  ||||||| ||||||||||||||| |||||||||||||||| ||| |  | |||||  ||| | |    |||   |||||| |||||     
T  8610060 attgtttttaattgtgagaacagacacatcgaaagtcccaccaccaagatcaaagataaaaatatttctattttccacacaattagctctcttctgaaga 8610159  T
Q  255 ccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcat 354  Q
    ||||||||||| || ||||| ||||||||||| || ||||| || ||||| ||||| | |||  |||| ||||||||||||||||| || ||||||||||    
T  8610160 ccatatgcaagagccgcagccgttggttcattgataatccggattacattaaggccagaaatgacaccagcatcttttgtggctttccgctgagaatcat 8610259  T
Q  355 tgaaataagccggaacagt 373  Q
    | |||||||| || |||||    
T  8610260 taaaataagcaggcacagt 8610278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 88 - 397
Target Start/End: Original strand, 8628608 - 8628917
Alignment:
Q  88 acattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagctattacatcaaagctatcatcttttagcgtgagaagagacacatcgaa 187  Q
    |||||||||||||||||||||||||||| |||||||||| ||| ||||| ||| | || ||||||  |||| |||| |  ||||| ||||||||||| ||    
T  8628608 acattctgttatcaaagtcctctccaccaaggtgagtatttccagcagtggctttaacttcaaagacatcacctttaattgtgaggagagacacatcaaa 8628707  T
Q  188 agtgccaccaccaagatcaatgatgagcacatttcgttttccgatgttatttat-tctcttttgaaggccatatgcaagggcagcagcagttggttcatt 286  Q
    ||| ||||||||||||||||  |  |  | ||||||||  || ||   |  ||  | | || | ||||||||||||||  || |||||||| || |||||    
T  8628708 agtcccaccaccaagatcaaacacaaaaatatttcgttcacc-atcacacctacctttgttgtcaaggccatatgcaatagctgcagcagtggggtcatt 8628806  T
Q  287 aattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcattgaaataagccggaacagtaacaactgcattc 386  Q
     ||||||| ||||||||| ||||| ||||| ||||| ||||   | ||||||||||| |||||||||||||||||||| || || || |||||||||||     
T  8628807 gattatcctcataacattaaggccagcaatggcaccagcattcatggtggcttttcgctgagaatcattgaaataagcaggcacggtgacaactgcattt 8628906  T
Q  387 ttgacaggtga 397  Q
    || ||||||||    
T  8628907 tttacaggtga 8628917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 236 - 394
Target Start/End: Original strand, 8647101 - 8647259
Alignment:
Q  236 atttattctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtg 335  Q
    |||| ||||||| | |||||||||||| || |||||||| ||||||||||| |||||||| || | ||| ||||| ||||| || ||||||||| | |||    
T  8647101 atttgttctcttgtcaaggccatatgcgagagcagcagctgttggttcattgattatccggatgatattaaggccagcaatggccccggcatctatagtg 8647200  T
Q  336 gcttttcgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacagg 394  Q
    |||||||| ||| |||||||||| || || || |||||||||||||||||||| |||||    
T  8647201 gcttttcgctgataatcattgaagtatgcaggcacagtaacaactgcattctttacagg 8647259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 242 - 398
Target Start/End: Complemental strand, 13333394 - 13333238
Alignment:
Q  242 tctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggctttt 341  Q
    |||||| | ||||||||||||||  || |||||||| |||||||| ||||| || || | ||| ||||| ||||| ||||| |||||| | ||||| |||    
T  13333394 tctcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatctatggtggccttt 13333295  T
Q  342 cgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtgac 398  Q
    || |||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||    
T  13333294 cgctgagaatcattgaagtaagccggcacagtaacaacggcattcttgactggtgac 13333238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 242 - 364
Target Start/End: Original strand, 8559563 - 8559685
Alignment:
Q  242 tctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggctttt 341  Q
    |||||||||||| ||||||||||| ||||| |||||||||||||| |||||| |||| ||||| || || |||||| |||| |||||||| |||||| ||    
T  8559563 tctcttttgaagtccatatgcaagagcagctgcagttggttcattgattatctgcattacattaagaccagcaatttcacctgcatctttggtggctctt 8559662  T
Q  342 cgttgagaatcattgaaataagc 364  Q
    | |||||||||||| ||||||||    
T  8559663 ctttgagaatcattaaaataagc 8559685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 415
Target Start/End: Original strand, 3147530 - 3147675
Alignment:
Q  270 gcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcattgaaataagccggaa 369  Q
    |||||||| |||||||| ||||||||||||| ||| ||||| |||||  |||| |||||| |||| ||||| || |||| ||||||||||||||| || |    
T  3147530 gcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatctattgtcgctttccgctgagcatcattgaaataagcaggta 3147629  T
Q  370 cagtaacaactgcattcttgacaggtgactccaaaaacttctctgc 415  Q
    | |||||||||||||||||||||||  | || ||||||| ||||||    
T  3147630 cggtaacaactgcattcttgacaggcaattctaaaaactcctctgc 3147675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 398
Target Start/End: Original strand, 8659381 - 8659749
Alignment:
Q  30 gggtttccaccaatgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctc 129  Q
    ||||| |||| ||||||||||||||||||| | || ||||||   || || | ||||| ||||||| |||||||||||||||| || |||||||| | ||    
T  8659381 gggttaccactaatgtccactttattcttctttttgaactcctctacaaagtagttcaccattctgctatcaaagtcctctcctccaaggtgagtgtttc 8659480  T
Q  130 cggcagtagctattacatcaaagctatcatcttttagcgtgagaagagacacatcgaaagtgccaccaccaagatcaatgatgagcacatttcgttttcc 229  Q
    | | ||| ||| |||| ||||||  |||| | || |  || || | ||||||||| ||||| |||||||||||||||| ||  |  | |||| |||| ||    
T  8659481 cagaagtggcttttacttcaaagacatcacccttcattgtaaggatagacacatcaaaagtaccaccaccaagatcaaagaccaaaatattttgtttacc 8659580  T
Q  230 gatgttatttat-tctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatc 328  Q
     ||   | | |  |||||| | ||  ||||||||||  || |||||||| ||||||||||||||| | || ||||| ||||| ||||| ||||||| |||    
T  8659581 -atcacagtcacctctcttgtcaaaaccatatgcaatagctgcagcagtaggttcattaattatctgaatgacattaaggccagcaatggcaccggaatc 8659679  T
Q  329 ttttgtggcttttcgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtgac 398  Q
    | | ||||||||||| |||||||||||||| || || || || |||||||| |||||||| |||||||||    
T  8659680 tatggtggcttttcgctgagaatcattgaactatgcaggcactgtaacaacagcattcttcacaggtgac 8659749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 385
Target Start/End: Original strand, 1301731 - 1301837
Alignment:
Q  279 ggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcattgaaataagccggaacagtaacaa 378  Q
    ||||||||||||||| | || ||||| ||||| |||||||||||||||||| | ||||||||||| ||||||||||||||||  || || ||||||||||    
T  1301731 ggttcattaattatctgaatgacattaaggccagcaattgcaccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaa 1301830  T
Q  379 ctgcatt 385  Q
    | |||||    
T  1301831 cagcatt 1301837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 241 - 391
Target Start/End: Original strand, 8667648 - 8667798
Alignment:
Q  241 ttctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttt 340  Q
    ||||||| | ||||||||||||||  || || ||||| |||||||| |||||||| || ||||| || || ||||| | ||| |||||| | ||||| ||    
T  8667648 ttctcttgtcaaggccatatgcaatagctgccgcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatctatggtggcctt 8667747  T
Q  341 tcgttgagaatcattgaaataagccggaacagtaacaactgcattcttgac 391  Q
    ||| |||||||||||||| ||||| || ||||||||||| |||||||||||    
T  8667748 tcgctgagaatcattgaagtaagctggcacagtaacaacggcattcttgac 8667798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 241 - 402
Target Start/End: Complemental strand, 8671569 - 8671408
Alignment:
Q  241 ttctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttt 340  Q
    ||||||| | ||||||||||||||  || |||||||| |||||||| |||||||| || ||||| || || ||||| | ||| |||||  | |||||  |    
T  8671569 ttctcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatcaatggtggccgt 8671470  T
Q  341 tcgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtgactcca 402  Q
    ||| |||||||||||||| ||||| || || |||||||| ||||||||||| ||||||||||    
T  8671469 tcgctgagaatcattgaagtaagctggcacggtaacaacggcattcttgaccggtgactcca 8671408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 251 - 397
Target Start/End: Complemental strand, 27830804 - 27830658
Alignment:
Q  251 aaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaa 350  Q
    ||||||||||||||  || |||||||| || ||  | ||||||||||||||||| ||||| ||||| ||||||| ||||   |||||||||||||||||     
T  27830804 aaggccatatgcaatagctgcagcagtaggctcgcttattatccgcataacattaaggccagcaatggcaccggaatctacagtggcttttcgttgagag 27830705  T
Q  351 tcattgaaataagccggaacagtaacaactgcattcttgacaggtga 397  Q
    |||||||||||||| || || || |  ||||||||||| || |||||    
T  27830704 tcattgaaataagctggcacggttattactgcattcttaaccggtga 27830658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 251 - 375
Target Start/End: Original strand, 17260480 - 17260604
Alignment:
Q  251 aaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaa 350  Q
    ||||||||||||||  || |||||| | ||||||||||||| |  || |||||  ||||| |||||  |||| |||||| | ||||||||||| ||||||    
T  17260480 aaggccatatgcaatagctgcagcaataggttcattaattaacttcaaaacataaaggccagcaataacaccagcatctatggtggcttttcgctgagaa 17260579  T
Q  351 tcattgaaataagccggaacagtaa 375  Q
    |||||||||||||| ||||||||||    
T  17260580 tcattgaaataagcaggaacagtaa 17260604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 397
Target Start/End: Original strand, 8654527 - 8654835
Alignment:
Q  89 cattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagctattacatcaaagctatcatcttttagcgtgagaagagacacatcgaaa 188  Q
    |||||||||||||||||| ||||| |||||||| || | ||| ||||| ||| |||| ||||||  |||| | || |  ||||| | ||||||||| |||    
T  8654527 cattctgttatcaaagtcttctccccctaggtgcgtgtttccagcagtggcttttacgtcaaagacatcacccttaattgtgagtatagacacatcaaaa 8654626  T
Q  189 gtgccaccaccaagatcaatgatgagcacatttcgttttccgatgttattta-ttctcttttgaaggccatatgcaagggcagcagcagttggttcatta 287  Q
    || ||||||||||||||||  |  |  | ||| ||||| || ||  || ||| ||| ||| | ||||||||||||||  || || ||||| ||||||||     
T  8654627 gtaccaccaccaagatcaaataccaaaatattccgtttacc-atcatagttacttcgcttgtcaaggccatatgcaatagctgcggcagtaggttcattg 8654725  T
Q  288 attatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcattgaaataagccggaacagtaacaactgcattct 387  Q
    | |||||| || || || || || ||||| ||||| |||||| | || |||||||| ||||| |||||||| || ||||| |||||||||||  |||| |    
T  8654726 agtatccgaatgacgttaagtccagcaatggcaccagcatctatggttgcttttcgctgagagtcattgaagtatgccggcacagtaacaacgacatttt 8654825  T
Q  388 tgacaggtga 397  Q
    |||| |||||    
T  8654826 tgacgggtga 8654835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 375
Target Start/End: Original strand, 17268178 - 17268302
Alignment:
Q  251 aaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaa 350  Q
    ||||||||||||||  || ||||||||||||||||| |||| |  ||  ||||| ||||| |||||  |||| |||||| | ||||||||||| ||||||    
T  17268178 aaggccatatgcaatagctgcagcagttggttcattgattaccttcaatacattaaggccagcaatgacaccagcatctatggtggcttttcgctgagaa 17268277  T
Q  351 tcattgaaataagccggaacagtaa 375  Q
    || ||||| |||||||| |||||||    
T  17268278 tcgttgaagtaagccgggacagtaa 17268302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 393
Target Start/End: Complemental strand, 8017294 - 8017200
Alignment:
Q  299 aacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacag 393  Q
    ||||||||| || |||||  |||||||||| ||||||||||  || || ||||||||||| ||||| ||||| |||||||| |||||||| ||||    
T  8017294 aacattgagtcctgcaatgacaccggcatcctttgtggcttgacgctgcgaatcattgaagtaagctggaactgtaacaacggcattcttcacag 8017200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 8538057 - 8538160
Alignment:
Q  33 tttccaccaatgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccgg 132  Q
    ||||||| |||||| ||||| || |||||||| || ||  |||| ||||| |||| ||  |  ||||||||||||||||| || ||||||||||||||||    
T  8538057 tttccactaatgtcaactttgtttttcctcttcaattcattcacaaaatgattcaccaaccgattatcaaagtcctctcctccaaggtgagtatctccgg 8538156  T
Q  133 cagt 136  Q
    ||||    
T  8538157 cagt 8538160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 213
Target Start/End: Original strand, 8559375 - 8559534
Alignment:
Q  54 ttcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagctattacatcaaagc 153  Q
    |||||||||| ||||||  | || || || |||| |||||||||||||||||||||||| || ||||| || ||||||| ||| ||  | || ||||||     
T  8559375 ttcttcctctcaaactcttttacaaagtgtttcaccattctgttatcaaagtcctctcctccgaggtgtgtgtctccggaagtggccttgacttcaaaga 8559474  T
Q  154 tatcatcttttagcgtgagaagagacacatcgaaagtgccaccaccaagatcaatgatga 213  Q
     || ||  || |  ||||||||||| ||||| ||||| |||||||| ||||||| |||||    
T  8559475 gattattcttaattgtgagaagagaaacatcaaaagttccaccaccgagatcaaagatga 8559534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 207
Target Start/End: Complemental strand, 8636434 - 8636316
Alignment:
Q  89 cattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagctattacatcaaagctatcatcttttagcgtgagaagagacacatcgaaa 188  Q
    |||||||||||||||||||||||| || ||||| || ||||||||||| ||| | || ||||||   ||| |||| |   |||| | |||||| |||||     
T  8636434 cattctgttatcaaagtcctctcctccaaggtgtgtgtctccggcagtggctttaacttcaaagacttcacctttaattttgagtatagacacgtcgaat 8636335  T
Q  189 gtgccaccaccaagatcaa 207  Q
    || ||||||||||||||||    
T  8636334 gtaccaccaccaagatcaa 8636316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 388
Target Start/End: Complemental strand, 8640421 - 8640339
Alignment:
Q  306 aggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcattgaaataagccggaacagtaacaactgcattctt 388  Q
    ||||| ||||| || ||||||||| | ||||||||| | ||| |||||||||| ||||| || | ||||||||||||||||||    
T  8640421 aggccagcaatggccccggcatctatggtggctttttgctgataatcattgaagtaagcaggcatagtaacaactgcattctt 8640339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 136
Target Start/End: Complemental strand, 27831025 - 27830919
Alignment:
Q  30 gggtttccaccaatgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctc 129  Q
    ||||| |||| |||||||||| | |||||| |||| ||| ||  ||| |||| ||||| ||| || |||||||||||||||||||| |||||||| | ||    
T  27831025 gggttcccactaatgtccactcttttcttcttcttgaacacctccacaaaatagttcaccatcctattatcaaagtcctctccaccaaggtgagtgtttc 27830926  T
Q  130 cggcagt 136  Q
    | |||||    
T  27830925 cagcagt 27830919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 207
Target Start/End: Original strand, 8667449 - 8667614
Alignment:
Q  42 atgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagcta 141  Q
    |||||||||||||||||| | || ||||||   || |||| ||||| |||||||||||| |||||||| || || |||||||| | ||| ||||| |||     
T  8667449 atgtccactttattcttcttttttaactcctcaacaaaatagttcaccattctgttatcgaagtcctcgcccccaaggtgagtgtttcctgcagtggctt 8667548  T
Q  142 ttacatcaaagctatcatcttttagcgtgagaagagacacatcgaaagtgccaccaccaagatcaa 207  Q
    | || ||||||  |||| | || |  ||||| | ||||||||| ||||| || ||||| |||||||    
T  8667549 tcacttcaaagacatcacccttaattgtgaggatagacacatcaaaagtcccgccacccagatcaa 8667614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 207
Target Start/End: Complemental strand, 10494512 - 10494347
Alignment:
Q  42 atgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagcta 141  Q
    |||||||| ||||||||| | || ||||||   || ||||  |||| |||||||||||| ||||||||||| || |||||||| |  || ||||| |||     
T  10494512 atgtccacgttattcttctttttgaactcctcaacaaaataattcaccattctgttatcgaagtcctctcccccaaggtgagtgttacctgcagtggctt 10494413  T
Q  142 ttacatcaaagctatcatcttttagcgtgagaagagacacatcgaaagtgccaccaccaagatcaa 207  Q
    |||| ||||||  |||| | || |  ||||| | ||||||||| ||||| |||||||| |||||||    
T  10494412 ttacttcaaagacatcacccttaattgtgaggatagacacatcaaaagtaccaccacccagatcaa 10494347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 8545675 - 8545757
Alignment:
Q  54 ttcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagt 136  Q
    ||||||||||| |||||| |||| || |  |||| |||||||||||||||||| || || ||||||| ||| ||||| |||||    
T  8545675 ttcttcctcttgaactccttcacaaagtaattcaccattctgttatcaaagtcttcaccgcctaggtaagtgtctccagcagt 8545757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 45 - 404
Target Start/End: Complemental strand, 16662127 - 16661768
Alignment:
Q  45 tccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagctatta 144  Q
    |||||||| |||||||| ||||| ||  |||| || | |||||||||||||||||||||||||||||| || |||||||| | ||| | ||| ||| | |    
T  16662127 tccactttgttcttcctattaaattctttcacaaagtagttcaacattctgttatcaaagtcctctcccccgaggtgagtgtttccagaagtggctttaa 16662028  T
Q  145 catcaaagctatcatcttttagcgtgagaagagacacatcgaaagtgccaccaccaagatcaatgatgagcacatttcgttttccgatgttattta-ttc 243  Q
    | ||||||  |||| |||| |  ||||| ||||||||||| ||||| |||||||||||||||| ||  |  | ||||| |||  | ||   | ||| |||    
T  16662027 cttcaaagacatcacctttaattgtgaggagagacacatcaaaagtcccaccaccaagatcaaagacaaaaatatttc-tttcaccatcacaattacttc 16661929  T
Q  244 tcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcg 343  Q
    | || | ||||||||||||||  || || ||||| |||||||| ||||||| || ||| || ||||| ||||| ||||| |||||  | |||||||||||    
T  16661928 ttttgtcaaggccatatgcaatagctgctgcagtgggttcattgattatcctcacaacgttaaggccagcaatggcaccagcatccatggtggcttttcg 16661829  T
Q  344 ttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtgactccaaa 404  Q
     |||||||| || |||||||| |||||||| ||||||||||| || || ||||| ||||||    
T  16661828 ctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaa 16661768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 241 - 386
Target Start/End: Original strand, 7542455 - 7542600
Alignment:
Q  241 ttctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttt 340  Q
    ||||||| | ||||||||||||||  || || ||||| |||||||| |||  || ||||||||||||||| ||||| ||||| |||||| | ||||||||    
T  7542455 ttctcttgtcaaggccatatgcaacagctgcggcagtaggttcattcattgccctcataacattgaggccagcaatggcacccgcatctatagtggcttt 7542554  T
Q  341 tcgttgagaatcattgaaataagccggaacagtaacaactgcattc 386  Q
    ||||||||||||||| |||||||| || ||||||||||||||||||    
T  7542555 tcgttgagaatcattaaaataagcaggtacagtaacaactgcattc 7542600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 242 - 397
Target Start/End: Original strand, 11999624 - 11999779
Alignment:
Q  242 tctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggctttt 341  Q
    |||||| | ||||||||||||||  |  |||||||| |||||||| |||| ||  |||||||||| ||| |||||||||||||||||| | |||||||||    
T  11999624 tctcttgtcaaggccatatgcaacagttgcagcagtgggttcattcattacccttataacattgatgccagcaattgcaccggcatctatagtggctttt 11999723  T
Q  342 cgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtga 397  Q
    |||||||||||| | |||||||| || |||||||||||  ||||||| || |||||    
T  11999724 cgttgagaatcactaaaataagctggtacagtaacaacaacattctttaccggtga 11999779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 241 - 400
Target Start/End: Original strand, 14703637 - 14703796
Alignment:
Q  241 ttctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttt 340  Q
    ||||||| | ||||||||||||||  || ||||| || |||||||| |||| || |||||||||||||||||||||  |||| |||||  | ||||||||    
T  14703637 ttctcttgtcaaggccatatgcaatagctgcagctgtaggttcattcattaccctcataacattgaggccggcaataacaccagcatccatagtggcttt 14703736  T
Q  341 tcgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtgactc 400  Q
    || |||||||||| | |||||||| || || ||||||||||||||||| |||| ||||||    
T  14703737 tctttgagaatcactaaaataagcaggcaccgtaacaactgcattcttaacagttgactc 14703796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 176 - 388
Target Start/End: Original strand, 43625576 - 43625788
Alignment:
Q  176 agacacatcgaaagtgccaccaccaagatcaatgatgagcacatttcgttttccgatgttatttattctcttttgaaggccatatgcaagggcagcagca 275  Q
    ||||||||| ||||| ||||||||||| |||| |||||  | |||||||| ||| |    ||| |||||||| | |||||| ||||| || ||||||||     
T  43625576 agacacatcaaaagtaccaccaccaaggtcaaagatgaaaatatttcgttctccaacacaattaattctcttgttaaggccgtatgctagagcagcagct 43625675  T
Q  276 gttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcattgaaataagccggaacagtaa 375  Q
    ||||||||||| ||||  || | |||||| |||||| ||||  ||||  ||||| | ||||||||||| |||||||||||||| ||||| || || ||||    
T  43625676 gttggttcattgattactcgtaaaacattaaggccgacaatgacaccaacatctatggtggcttttcgctgagaatcattgaagtaagcaggcacggtaa 43625775  T
Q  376 caactgcattctt 388  Q
    |||||||||||||    
T  43625776 caactgcattctt 43625788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 242 - 397
Target Start/End: Complemental strand, 12245344 - 12245189
Alignment:
Q  242 tctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggctttt 341  Q
    |||||||| ||||||||||||||  || |||||||| |||||||| |||| || |||||||||||| || |||||||  || |||||| | || ||||||    
T  12245344 tctcttttcaaggccatatgcaacagctgcagcagtgggttcattcattaccctcataacattgagaccagcaattgagccagcatctatcgttgctttt 12245245  T
Q  342 cgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtga 397  Q
    || ||||||||| | |||||||| || ||||||||||| |||||||| || |||||    
T  12245244 cgctgagaatcactaaaataagcaggtacagtaacaacagcattctttaccggtga 12245189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 241 - 402
Target Start/End: Complemental strand, 16657456 - 16657295
Alignment:
Q  241 ttctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttt 340  Q
    ||||||| | ||| ||||||||||  || |||||||| |||||||| || || || || ||||| ||||| || || ||||| |||||| | ||||||||    
T  16657456 ttctcttgtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagcgatggcaccagcatctatggtggcttt 16657357  T
Q  341 tcgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtgactcca 402  Q
    ||| || ||||||||||| ||||| || ||||||||||| |||||||||||||| |||||||    
T  16657356 tcgctgcgaatcattgaagtaagctggcacagtaacaacagcattcttgacaggcgactcca 16657295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 279 - 388
Target Start/End: Original strand, 12234956 - 12235065
Alignment:
Q  279 ggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcattgaaataagccggaacagtaacaa 378  Q
    ||||| || |||| || ||||||||||||||| |||||  |||| |||||| | || ||||||||||||||||||||||||||||| || || |||||||    
T  12234956 ggttcgttcattaccctcataacattgaggccagcaatgacaccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaa 12235055  T
Q  379 ctgcattctt 388  Q
    ||||||||||    
T  12235056 ctgcattctt 12235065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 174 - 397
Target Start/End: Complemental strand, 12258587 - 12258364
Alignment:
Q  174 agagacacatcgaaagtgccaccaccaagatcaatgatgagcacatttcgttttccgatgttatttattctcttttgaaggccatatgcaagggcagcag 273  Q
    ||||||||||| |||||||||||||||||||||| ||  |  | ||| |||||| |||    ||| ||||| || | ||||||||||||||  || ||||    
T  12258587 agagacacatcaaaagtgccaccaccaagatcaaagacaaaaatattccgtttttcgacacaattaattcttttgtcaaggccatatgcaaaagctgcag 12258488  T
Q  274 cagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcattgaaataagccggaacagt 373  Q
    |||| |||||||| | ||||  ||||||||| |||||  ||||   |||  ||||| | |||||||| | ||| |||||| | ||||| || || |||||    
T  12258487 cagtaggttcatttaatatcttcataacattcaggccaacaatattacccacatctatagtggctttcctttgtgaatcactaaaatatgcaggcacagt 12258388  T
Q  374 aacaactgcattcttgacaggtga 397  Q
    ||||||||||||||| || |||||    
T  12258387 aacaactgcattcttaacgggtga 12258364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 151
Target Start/End: Complemental strand, 16657655 - 16657546
Alignment:
Q  42 atgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagcta 141  Q
    |||||||| ||||||||| | | |||||||   || || | ||||| | |||||||||||||||||||||| || |||||||| | ||||||||| |||     
T  16657655 atgtccaccttattcttcttttgaaactcctctacaaagtagttcaccgttctgttatcaaagtcctctcccccaaggtgagtgtttccggcagtggctt 16657556  T
Q  142 ttacatcaaa 151  Q
    |||| |||||    
T  16657555 ttacctcaaa 16657546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 12234766 - 12234810
Alignment:
Q  89 cattctgttatcaaagtcctctccacctaggtgagtatctccggc 133  Q
    |||||||||||||||||||||||| || |||||||| | ||||||    
T  12234766 cattctgttatcaaagtcctctcccccgaggtgagtgtttccggc 12234810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 14703479 - 14703535
Alignment:
Q  83 gttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagc 139  Q
    ||||| |||||||||||| ||||||||||| || |||||||| | ||| ||||||||    
T  14703479 gttcaccattctgttatcgaagtcctctcccccgaggtgagtgtttccagcagtagc 14703535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 242 - 400
Target Start/End: Original strand, 12528734 - 12528892
Alignment:
Q  242 tctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggctttt 341  Q
    ||||||||||| |||||||||||| ||||| ||||||||||| || |||||||| || ||||||||||| |||||  |||| ||||| || ||||||  |    
T  12528734 tctcttttgaatgccatatgcaagagcagctgcagttggttcgttgattatccgtattacattgaggccagcaatgacaccagcatccttggtggctcgt 12528833  T
Q  342 cgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtgactc 400  Q
    || || |||||||||||||| || || || ||||  ||||||||||| |||||||||||    
T  12528834 cgctgcgaatcattgaaatacgctggcaccgtaatcactgcattcttaacaggtgactc 12528892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 241 - 394
Target Start/End: Original strand, 43745078 - 43745229
Alignment:
Q  241 ttctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttt 340  Q
    |||||||||  || ||||||||||  || |||||||| |||||||| ||||||  ||||||||  || || ||||| ||||| ||||||   ||||||||    
T  43745078 ttctcttttccagaccatatgcaatagctgcagcagtgggttcattgattatcttcataacatcaagcccagcaatggcaccagcatcta--gtggcttt 43745175  T
Q  341 tcgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacagg 394  Q
     || ||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  43745176 ccgctgataatcattgaaataagccggcacagtaacaactgcattcttgacagg 43745229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 136
Target Start/End: Original strand, 12528533 - 12528628
Alignment:
Q  41 aatgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagt 136  Q
    |||||| ||||| |||||||||||||||||  |||| || || |||| |||||  ||||||||||||||||| || |||||||| |||||||||||    
T  12528533 aatgtcaactttgttcttcctcttaaactctttcacaaagtgattcaccattcgattatcaaagtcctctcctccaaggtgagtgtctccggcagt 12528628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 241 - 404
Target Start/End: Complemental strand, 9335830 - 9335667
Alignment:
Q  241 ttctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttt 340  Q
    ||||||| | ||||||||||||||  || |||||||| |||||||| |||||||| || ||||| ||||| ||||| | ||| |||||| | ||||| ||    
T  9335830 ttctcttatcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagtaccagcatctatggtggcctt 9335731  T
Q  341 tcgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtgactccaaa 404  Q
    ||| |||||||||||||| ||||| || || |||||||| ||||||||||| || ||| |||||    
T  9335730 tcgctgagaatcattgaagtaagctggcacggtaacaacggcattcttgaccggcgaccccaaa 9335667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 242 - 393
Target Start/End: Original strand, 35132678 - 35132829
Alignment:
Q  242 tctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggctttt 341  Q
    |||||| | ||||||||||||||  || || ||||| |||||||| ||||  | |||||||||| | || ||||| ||||| |||||| | |||||||||    
T  35132678 tctcttgtcaaggccatatgcaaccgctgcggcagtaggttcattcattactctcataacattgggaccagcaatagcaccagcatctatagtggctttt 35132777  T
Q  342 cgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacag 393  Q
    |||||||||||| | |||||||| || |||||||||||||||||||| ||||    
T  35132778 cgttgagaatcactaaaataagcaggcacagtaacaactgcattcttaacag 35132829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 84 - 207
Target Start/End: Original strand, 30775324 - 30775447
Alignment:
Q  84 ttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagctattacatcaaagctatcatcttttagcgtgagaagagacacat 183  Q
    ||||||||||||||||||||||||||||| || | |||||| | ||| ||||| ||| | || |||||   ||||||| | |  ||||||||||||||||    
T  30775324 ttcaacattctgttatcaaagtcctctcccccgatgtgagtgtttccagcagttgctttaacttcaaacacatcatctctaatggtgagaagagacacat 30775423  T
Q  184 cgaaagtgccaccaccaagatcaa 207  Q
    | ||||| ||||||||||||||||    
T  30775424 caaaagtcccaccaccaagatcaa 30775447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 267 - 388
Target Start/End: Original strand, 54396678 - 54396799
Alignment:
Q  267 gcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcattgaaataagccg 366  Q
    ||||||||||| || |||||||| |||| ||  ||||| |  || | ||| ||||| |||||||| || ||||  ||||||||||||||||||||||| |    
T  54396678 gcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcag 54396777  T
Q  367 gaacagtaacaactgcattctt 388  Q
    ||||||||||||| ||||||||    
T  54396778 gaacagtaacaacagcattctt 54396799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 415
Target Start/End: Original strand, 30775482 - 30775655
Alignment:
Q  242 tctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggctttt 341  Q
    |||||| | ||| ||||||||||  || || ||||| || ||||||||||| | ||||||||| || || ||||| ||||| |||||  | |||||||||    
T  30775482 tctcttctcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggctttt 30775581  T
Q  342 cgttgagaatcattgaaataagccggaacagtaacaactgcattcttgacaggtgactccaaaaacttctctgc 415  Q
    || || | ||||||||||||||| || ||||| | ||||||||| || || || || |||||| || |||||||    
T  30775582 cgctgtgcatcattgaaataagcaggcacagtgataactgcatttttaactggggattccaaatacatctctgc 30775655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 388
Target Start/End: Complemental strand, 23587646 - 23587525
Alignment:
Q  267 gcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcattgaaataagccg 366  Q
    |||||||| || ||||||||||| || | ||  |||||||| || | |||  |||||||||||||||| ||||  ||||| ||||| ||||| ||||| |    
T  23587646 gcagcagcggtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacgttgtgaatcgttgaagtaagcag 23587547  T
Q  367 gaacagtaacaactgcattctt 388  Q
    | ||||| ||||| ||||||||    
T  23587546 gcacagttacaacggcattctt 23587525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 35132519 - 35132572
Alignment:
Q  83 gttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagt 136  Q
    ||||| ||||||||||||||||||||||||||| || ||||| | |||||||||    
T  35132519 gttcaccattctgttatcaaagtcctctccaccgagatgagtgtttccggcagt 35132572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 54396462 - 54396551
Alignment:
Q  51 ttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagct 140  Q
    ||||| |||||| ||||||||   || ||||| |||| ||||||||||||||| || || ||||| || |||||||| || |||||||||    
T  54396462 ttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct 54396551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 385
Target Start/End: Original strand, 15595308 - 15595414
Alignment:
Q  279 ggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcattgaaataagccggaacagtaacaa 378  Q
    |||||||| |||| ||| |||||||| ||||| ||||| ||||| |||||| | ||||||||||||||||||||||||| |||||| || || |||||||    
T  15595308 ggttcattgattacccgtataacattaaggccagcaatggcacctgcatctatagtggcttttcgttgagaatcattgagataagcaggcacggtaacaa 15595407  T
Q  379 ctgcatt 385  Q
    |||||||    
T  15595408 ctgcatt 15595414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 4678697 - 4678586
Alignment:
Q  41 aatgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagct 140  Q
    ||||||||| ||||||||| | || ||||||   || || | ||||| |||||||||||||||||||||||||||||||||||| | ||| ||||| |||    
T  4678697 aatgtccacattattcttctttttgaactcctctacaaagtagttcaccattctgttatcaaagtcctctccacctaggtgagtgtttccagcagtggct 4678598  T
Q  141 attacatcaaag 152  Q
     |||| ||||||    
T  4678597 tttacttcaaag 4678586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 393
Target Start/End: Complemental strand, 4678483 - 4678345
Alignment:
Q  255 ccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcat 354  Q
    ||||||||||  || ||| |||| ||||| || |||||  | || ||||| || || ||||| ||||| |||||| | || |||||||||||||||||||    
T  4678483 ccatatgcaatagctgcaacagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgttgagaatcat 4678384  T
Q  355 tgaaataagccggaacagtaacaactgcattcttgacag 393  Q
    |||| || || || |||||||||||  ||||||| ||||    
T  4678383 tgaagtatgcaggcacagtaacaacgacattcttcacag 4678345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 388
Target Start/End: Complemental strand, 34466731 - 34466585
Alignment:
Q  242 tctcttttgaaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggctttt 341  Q
    |||||| | ||| ||||||||||  || |||||||| |||||||| |||||  ||| |||||| ||||| ||||| | ||| |||||    || ||||||    
T  34466731 tctcttgtcaagtccatatgcaatagctgcagcagtgggttcattgattatttgcaaaacattaaggccagcaatagtaccagcatccacagtagctttt 34466632  T
Q  342 cgttgagaatcattgaaataagccggaacagtaacaactgcattctt 388  Q
    || ||||||||||| |||||||| || || || | ||||||||||||    
T  34466631 cgctgagaatcattaaaataagcaggcacggtgataactgcattctt 34466585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 394
Target Start/End: Original strand, 28220194 - 28220333
Alignment:
Q  255 ccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcat 354  Q
    ||||||||||  ||||||||||| |||||||| | |||||  | |||||| || || ||||| | ||| |||||| | |||||||| || ||| ||||||    
T  28220194 ccatatgcaatagcagcagcagtgggttcattgactatccttagaacatttagaccagcaatggtacctgcatctatggtggctttccgctgataatcat 28220293  T
Q  355 tgaaataagccggaacagtaacaactgcattcttgacagg 394  Q
    |||||||||| || ||||||| ||||||||||||||||||    
T  28220294 tgaaataagcaggcacagtaataactgcattcttgacagg 28220333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 340
Target Start/End: Complemental strand, 42555833 - 42555760
Alignment:
Q  267 gcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttt 340  Q
    ||||||||||| |||||||| ||||||  ||||||||| || || ||||| | ||| |||||| ||||||||||    
T  42555833 gcagcagcagtgggttcattgattatcttcataacattcagaccagcaatagtacctgcatctattgtggcttt 42555760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 11133017 - 11133118
Alignment:
Q  35 tccaccaatgtccactttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggca 134  Q
    ||||| |||||| | ||||| |||||||   |||||  |||| |||||||||| |||| ||||||||||||| | ||| || |||||||||||||| |||    
T  11133017 tccactaatgtcaattttatgcttcctcaagaactctttcacgaaatggttcaccattgtgttatcaaagtcttgtcccccgaggtgagtatctccagca 11133116  T
Q  135 gt 136  Q
    ||    
T  11133117 gt 11133118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 391
Target Start/End: Original strand, 28910852 - 28910961
Alignment:
Q  282 tcattaattatccgcataacattgaggccggcaattgcaccggcatcttttgtggcttttcgttgagaatcattgaaataagccggaacagtaacaactg 381  Q
    ||||| ||||||||||||||||| || | | |||| ||||| |||||| | |||||||| |  | |||||||||||||||| | |  | |||||||| ||    
T  28910852 tcattgattatccgcataacattaagcctgacaatggcaccagcatctatggtggctttcctctaagaatcattgaaataaccagtcaaagtaacaattg 28910951  T
Q  382 cattcttgac 391  Q
    ||||||||||    
T  28910952 cattcttgac 28910961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 11170809 - 11170887
Alignment:
Q  251 aaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaattgcaccggcatct 329  Q
    ||||||||||||||  ||||| ||||| || ||||| | ||| |||| |||||||||||| ||||| ||||| ||||||    
T  11170809 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatct 11170887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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