View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3457_low_4 (Length: 378)
Name: NF3457_low_4
Description: NF3457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3457_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 360
Target Start/End: Complemental strand, 16964679 - 16964334
Alignment:
| Q |
15 |
cacagaacacctaaaatatttcaaacagtccgaaaaggaccggttatctgagctcgtcttttcggataaacacattgataatgatgagtccaagagttgt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16964679 |
cacagaacacctaaaatatttcaaacagtccgaaaaggaccggttatctgagctcgtcttttcggataaacacattgataatgatgagtccaagagttgt |
16964580 |
T |
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| Q |
115 |
gctgtggactttgatgataaagttcttgatctgatgcttcagcacgaaaaacttaaaggcatgtttgttaagtgcttggttcagccgaaggagcgagatt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16964579 |
gctgtggactttgatgataaagttcttgatctgatgcttcagcacgaaaaacttaaaggcatgtttgttaagtgcttggttcagccgaaggagcgagatt |
16964480 |
T |
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| Q |
215 |
ttgtcgagagtttcggctattgattatactttagatgaatgtcaacttctaaagttttagtctataggccaaggacaaacaactttcaaaggtattacag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16964479 |
ttgtcgagagtttcggctattgattatactttagatgaatgtcaacttctaaagttttagtctataggccaaggacaaacaactttcaaaggtattacag |
16964380 |
T |
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| Q |
315 |
gttttacattttcttttagtttcactgatttcatttattattacta |
360 |
Q |
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| T |
16964379 |
gttttacattttcttttagtttcactgatttcatttattattacta |
16964334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 120 - 241
Target Start/End: Complemental strand, 16988787 - 16988669
Alignment:
| Q |
120 |
ggactttgatgataaagttcttgatctgatgcttcagcacgaaaaacttaaaggcatgtttgttaagtgcttggttcagccgaaggagcgagattttgtc |
219 |
Q |
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| T |
16988787 |
ggacattgaagatagaattcttgatctaatgattcggcacgaaaatctcaaagacatgtttgttgagtgtgtggtacagccgaaggagcgagaattt--- |
16988691 |
T |
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| Q |
220 |
gagagtttcggctattgattat |
241 |
Q |
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|||||||| ||||||||||||| |
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| T |
16988690 |
gagagttttggctattgattat |
16988669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 213
Target Start/End: Original strand, 10604983 - 10605165
Alignment:
| Q |
37 |
aaacagtccgaaaaggaccggttatctgagctcgtcttttcggataaaca---cattgataatgatgag---tccaagagttgtgctgtggactttgatg |
130 |
Q |
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|||||| ||||||||||||||||||||||||| || |||||||| ||| | || |||| ||||||| |||||||| ||||| | | ||||||| | |
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| T |
10604983 |
aaacaggccgaaaaggaccggttatctgagcttgttttttcggagaaaaatgccaccgatattgatgaggagtccaagagctgtgcagggaactttgaag |
10605082 |
T |
|
| Q |
131 |
ataaagttcttgatctgatgcttcagcacgaaaaacttaaaggcatgtttgttaagtgcttggttcagccgaaggagcgagat |
213 |
Q |
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| T |
10605083 |
atagagttcttgatcagatgactcggcatgaaaatctcaaagacatgtttgttaagtgtgtggtactgaggaaggagcgagat |
10605165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 249
Target Start/End: Complemental strand, 16820625 - 16820418
Alignment:
| Q |
36 |
caaacagtccgaaaaggaccggttatctgagctcgtcttttcggataaacacattgataatgatgagtccaagagttgtgctgtggactttgatgataaa |
135 |
Q |
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||||||| |||||||| || |||||||||| || || ||||||| |||| | |||||| ||| ||||||||||||||||||| ||||||| |||| | |
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| T |
16820625 |
caaacaggccgaaaagcacaggttatctgaactggttttttcggctaaaaatgctgataaagataagtccaagagttgtgctgttaactttgaagataga |
16820526 |
T |
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| Q |
136 |
gttcttgatctgatgcttcagcacgaaaaacttaaaggcatgtttgttaagtgcttggttcagccgaaggagcgagattttgtcgagagtttcggctatt |
235 |
Q |
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| T |
16820525 |
attcttgatcagttgaaacagcacgaaacgttcaaagacgtgtttgtta------cagttcagtcaaaggagcgagatttggttgagagtttcggctctt |
16820432 |
T |
|
| Q |
236 |
gattatactttaga |
249 |
Q |
| |
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||||| |||||||| |
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| T |
16820431 |
gattaaactttaga |
16820418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 16973515 - 16973427
Alignment:
| Q |
101 |
agtccaagagttgtgctgtggactttgatgataaagttcttgatctgatgcttcagcacgaaaaacttaaaggcatgtttgttaagtgc |
189 |
Q |
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|||||||||| | ||||||| |||| || |||| |||||||||| |||| | |||| ||||| || |||||||| |||||||||||| |
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| T |
16973515 |
agtccaagagctctgctgtgaacttcgaagatagagttcttgatgagatgactaagcatgaaaagctcaaaggcatatttgttaagtgc |
16973427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 16973585 - 16973545
Alignment:
| Q |
37 |
aaacagtccgaaaaggaccggttatctgagctcgtcttttc |
77 |
Q |
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| T |
16973585 |
aaacaggccgaaaaagaccggttatctgagctcgttttttc |
16973545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 35924345 - 35924251
Alignment:
| Q |
95 |
atgatgagtccaagagttgtgctgtggactttgatgataaagttcttgatctgatgcttcagcacgaaaaacttaaaggcatgtttgttaagtgc |
189 |
Q |
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||||| |||||||||| | |||||| |||| || |||| |||||||||| |||| | |||||||||| || ||||||||||||||||||||| |
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| T |
35924345 |
atgataagtccaagagctctgctgtcaacttcgaagatagagttcttgatgagatgactaagcacgaaaagctcaaaggcatgtttgttaagtgc |
35924251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 35266556 - 35266649
Alignment:
| Q |
96 |
tgatgagtccaagagttgtgctgtggactttgatgataaagttcttgatctgatgcttcagcacgaaaaacttaaaggcatgtttgttaagtgc |
189 |
Q |
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|||| |||||||||| | ||||||| |||| || |||| |||||||||| |||| | | |||||||| || |||||||| |||||||||||| |
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| T |
35266556 |
tgataagtccaagagctctgctgtgaacttcgaagatagagttcttgatgagatgactaaacacgaaaagctcaaaggcatatttgttaagtgc |
35266649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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