View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3457_low_5 (Length: 376)
Name: NF3457_low_5
Description: NF3457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3457_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 9 - 358
Target Start/End: Complemental strand, 43986235 - 43985886
Alignment:
| Q |
9 |
agcacagagatgataactgttaactgtttgaatccagaggattttcgttgtccaatttcactcgaactaatgactgatccagtaacagtttcaacaggac |
108 |
Q |
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| T |
43986235 |
agcacggagatgataactgttaactgtttgaatccagaggattttcgttgtccaatttcactcgaactaatgactgatccagtaacagtttcaacaggac |
43986136 |
T |
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| Q |
109 |
aaacctacgatcgtgcttcaattcagacatggcttaaagcaggaaacaaaacatgccctaaaacaggggagaatattaaaaacacagagttagtcccaaa |
208 |
Q |
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| T |
43986135 |
aaacctacgatcgtgcttcaattcagacatggcttaaagcaggaaacaaaacatgccctaaaacaggggagaatattaaaaacacagagttagtcccaaa |
43986036 |
T |
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| Q |
209 |
cacaacgctgaagagacttatccaacaattttgcagtgataatggtatttcattcacaagattttctaaccgtaaccgtgacataacgaggacgatttta |
308 |
Q |
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| T |
43986035 |
cacaacgctgaagagacttatccaacaattttgcagtgataatggtatttcattcacaagattttctaaccgtaaccgtgacataacgaggacgatttta |
43985936 |
T |
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| Q |
309 |
cccggtagttctgcagcagcacatgctacgcagtttctgtcatggtttct |
358 |
Q |
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| T |
43985935 |
cccggtagttctgcagcagcacatgctacgcagtttctgtcatggtttct |
43985886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 175
Target Start/End: Complemental strand, 35206491 - 35206370
Alignment:
| Q |
54 |
cgttgtccaatttcactcgaactaatgactgatccagtaacagtttcaacaggacaaacctacgatcgtgcttcaattcagacatggcttaaagcaggaa |
153 |
Q |
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| T |
35206491 |
cgttgtccgatttctctggaactaatgacagatcctgtaactgtttccactggccaaacatacaacagaacctcaattcaaaaatggtttaaagcaggaa |
35206392 |
T |
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| Q |
154 |
acaaaacatgccctaaaacagg |
175 |
Q |
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| T |
35206391 |
acatgacatgtccaaaaacagg |
35206370 |
T |
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