View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3457_low_6 (Length: 350)
Name: NF3457_low_6
Description: NF3457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3457_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 331
Target Start/End: Complemental strand, 43117596 - 43117277
Alignment:
| Q |
12 |
agagaggttttgattgatatccaagggctttttggtcaaaacaagctcatcataaatcatgtgttctaaaataatctaaaacatgtgagatacaaaaaca |
111 |
Q |
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| T |
43117596 |
agagaggttttgattgatatccaagggctttttggtcaaaacaagctcatcatcaatcatgtgttctaaaataatctaaaacatgtgagatacaaaaaca |
43117497 |
T |
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| Q |
112 |
aaacaagataatcaaacaagcaaatgaacaatggaaagtgtaagtaacattggtttctcttcaacattgagaacttctttggacacaaaactactttcaa |
211 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43117496 |
aaacaagataatcaaacaagcaaaagaacaatggaaagtgtaagtaacattggtttctcttcaacattgagaacttctttgtacacaaaactactttcaa |
43117397 |
T |
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| Q |
212 |
agcagaggaaacaaaaatcgccatgcagttttatgattcctctcaactactctattaggatgaacaaaatttgctgtacactatcagaaaatgggattga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43117396 |
agcagaggaaacaaaaatcgccatgcagttttatgattcctctcaactactctattaggatgaacaaaatttgctgtacactatcagaaagtgggattga |
43117297 |
T |
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| Q |
312 |
agagaatcctaccagcaaaa |
331 |
Q |
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|||||||||||||||||||| |
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| T |
43117296 |
agagaatcctaccagcaaaa |
43117277 |
T |
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