View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3457_low_7 (Length: 332)
Name: NF3457_low_7
Description: NF3457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3457_low_7 |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 7e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 25027452 - 25027270
Alignment:
| Q |
18 |
gttatctctctcccattaggaaaaattctttatacacagaaatacgtccaccatctcccaaaagattcagagtccagaaatcaattggtgattgcagtag |
117 |
Q |
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| T |
25027452 |
gttatctctctcccatcaggaaaaattctttatacacagaaatacgtccaccatctcccaaaagattcagagtccagaa-tcaattggtggttgcagtag |
25027354 |
T |
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| Q |
118 |
ttatttttcataatgccgttctataatgctaagtaacttagattatattgggtcttcctagataatgaattttcataatgaata |
201 |
Q |
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| T |
25027353 |
ttatttttcataatgccgttctataataataagtaacttaggttatattgggtcttcctagataatgaattttcataatgaata |
25027270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 293
Target Start/End: Complemental strand, 25027276 - 25027240
Alignment:
| Q |
257 |
atgaatatgtctattattggatgtccatccatcaccc |
293 |
Q |
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| T |
25027276 |
atgaatatatctattattggatgtccatccattaccc |
25027240 |
T |
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Target: scaffold0194 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 15767 - 15845
Alignment:
| Q |
20 |
tatctctctcccattaggaaaaattc-tttatacacagaaatacgtccaccatctcccaaaagattcagagtccagaaa |
97 |
Q |
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| T |
15767 |
tatctctctcccatcaggtaaaattcctttatacacagagccaaatccaccttctcccaaaagattcagagtcgagaaa |
15845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 145546 - 145501
Alignment:
| Q |
256 |
tatgaatatgtctattattggatgtccatccatcacccttccacat |
301 |
Q |
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| T |
145546 |
tatgaatatatctattagtggatgtccatccattacccttccacat |
145501 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 25397916 - 25397961
Alignment:
| Q |
256 |
tatgaatatgtctattattggatgtccatccatcacccttccacat |
301 |
Q |
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| T |
25397916 |
tatgaatatatctattagtggatgtccatccattatccttccacat |
25397961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 22746500 - 22746545
Alignment:
| Q |
256 |
tatgaatatgtctattattggatgtccatccatcacccttccacat |
301 |
Q |
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||||||||| ||||| | ||||||||||||||| |||||||||||| |
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| T |
22746500 |
tatgaatatatctatcagtggatgtccatccattacccttccacat |
22746545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 22748887 - 22748932
Alignment:
| Q |
256 |
tatgaatatgtctattattggatgtccatccatcacccttccacat |
301 |
Q |
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||||||||| ||||||| ||||||||||||||| |||||| ||||| |
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| T |
22748887 |
tatgaatatatctattagtggatgtccatccattaccctttcacat |
22748932 |
T |
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