View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3458_high_10 (Length: 243)
Name: NF3458_high_10
Description: NF3458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3458_high_10 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 2462130 - 2462353
Alignment:
| Q |
18 |
ggatggtgctacatcagggatgggaataagtgctctaacctgcattgcacccaatttgacataaataagaaagtttatttgacttaaatatgtcaggtgt |
117 |
Q |
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| T |
2462130 |
ggatggtgctacatcagggatgggaataagtgctctaacctgcattgcacccaatttgacataaataagaaagtttatttgacttaaatatgtcaggtgt |
2462229 |
T |
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| Q |
118 |
acaacaaaatttgttgttatgattaatatatcaatgaattgcatataaataaacaaagtttttgttgttttgattatatcatatttaatttcatcatgat |
217 |
Q |
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| T |
2462230 |
acaacaaaatttgttgttatgattaatatatcaatgaattgcatataaataaacaaagtttttgttgttatgat--tatcatatttaatttcatcatgat |
2462327 |
T |
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| Q |
218 |
gtcttgaaattgtgttgtctgttttt |
243 |
Q |
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| T |
2462328 |
gtcttgaaattgtgttgtctgttttt |
2462353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 2451120 - 2451326
Alignment:
| Q |
18 |
ggatggtgctacatcagggatgggaataagtgctctaacctgcattgcacccaatttgacataaataagaaagtttatttgacttaaatatgtcaggtgt |
117 |
Q |
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| T |
2451120 |
ggatggtgctacataagggtttggaataagtgttctaacctgcattgtacccaattcgacataaataagaaagtttatttgacttaaatttgttaggttt |
2451219 |
T |
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| Q |
118 |
acaacaaaatttgttgttatgattaatatatcaatgaattgcatataaataaacaaagtttttgttgttttgattatatcatatttaa-tttcatcatga |
216 |
Q |
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| T |
2451220 |
acaaca------------------aatttatctatgaattgaatataaataatcaaagattttgttgttatgat--tatcatatttaattttcatcatga |
2451299 |
T |
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| Q |
217 |
tgtcttgaaattgtgttgtctgttttt |
243 |
Q |
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| T |
2451300 |
tgtcttgaaattgtgttgtctattttt |
2451326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 125
Target Start/End: Original strand, 2446356 - 2446447
Alignment:
| Q |
34 |
gggatgggaataagtgctctaacctgcattgcacccaatttgacataaataagaaagtttatttgacttaaatatgtcaggtgtacaacaaa |
125 |
Q |
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| T |
2446356 |
gggatgggaataagatttctaatctgcattggacccgattctacataaataagaaagtttatttgactaaaatttgttaggtgtccaacaaa |
2446447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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