View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3458_low_10 (Length: 253)

Name: NF3458_low_10
Description: NF3458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3458_low_10
NF3458_low_10
[»] chr1 (12 HSPs)
chr1 (11-252)||(33007368-33007609)
chr1 (14-132)||(43407087-43407205)
chr1 (14-134)||(338474-338594)
chr1 (23-144)||(9537120-9537241)
chr1 (11-141)||(8421921-8422051)
chr1 (14-105)||(37666898-37666989)
chr1 (98-215)||(6836222-6836340)
chr1 (43-80)||(18472637-18472674)
chr1 (31-85)||(16075157-16075211)
chr1 (11-80)||(25921908-25921976)
chr1 (43-102)||(35761753-35761813)
chr1 (43-80)||(6836396-6836433)
[»] chr2 (10 HSPs)
chr2 (11-141)||(18292411-18292541)
chr2 (13-144)||(40729146-40729277)
chr2 (14-134)||(40447847-40447967)
chr2 (11-141)||(34397536-34397664)
chr2 (14-112)||(41339973-41340071)
chr2 (98-228)||(44788812-44788942)
chr2 (44-80)||(35670502-35670538)
chr2 (43-80)||(12774141-12774178)
chr2 (14-92)||(28266832-28266910)
chr2 (43-80)||(44789004-44789041)
[»] chr7 (13 HSPs)
chr7 (14-132)||(10288511-10288629)
chr7 (16-141)||(49170023-49170150)
chr7 (11-115)||(40106195-40106299)
chr7 (11-134)||(12911410-12911533)
chr7 (11-115)||(12196413-12196517)
chr7 (11-92)||(11036063-11036145)
chr7 (14-105)||(15873695-15873786)
chr7 (149-215)||(9993612-9993678)
chr7 (43-92)||(22078083-22078133)
chr7 (44-80)||(48653547-48653583)
chr7 (149-228)||(11036166-11036244)
chr7 (43-79)||(21491196-21491233)
chr7 (11-54)||(40106294-40106338)
[»] chr3 (10 HSPs)
chr3 (14-132)||(7336414-7336532)
chr3 (14-105)||(5004440-5004531)
chr3 (11-93)||(16975727-16975809)
chr3 (11-80)||(43277763-43277832)
chr3 (14-105)||(46404321-46404412)
chr3 (98-228)||(17542468-17542599)
chr3 (152-222)||(9104494-9104564)
chr3 (43-92)||(9104588-9104638)
chr3 (37-102)||(8731203-8731269)
chr3 (37-102)||(9083090-9083156)
[»] chr4 (10 HSPs)
chr4 (11-140)||(55162514-55162643)
chr4 (14-134)||(40459317-40459437)
chr4 (11-126)||(28968956-28969076)
chr4 (98-228)||(69591-69722)
chr4 (11-102)||(13652932-13653024)
chr4 (11-102)||(13661057-13661149)
chr4 (11-54)||(55162638-55162681)
chr4 (43-80)||(69784-69821)
chr4 (35-80)||(2761801-2761846)
chr4 (43-79)||(49499523-49499560)
[»] chr5 (11 HSPs)
chr5 (11-134)||(30910165-30910287)
chr5 (11-141)||(40691234-40691364)
chr5 (17-140)||(38001343-38001463)
chr5 (14-105)||(537215-537306)
chr5 (98-228)||(6308962-6309090)
chr5 (46-80)||(42861835-42861869)
chr5 (44-80)||(6309188-6309224)
chr5 (11-41)||(38001478-38001508)
chr5 (99-132)||(104644-104677)
chr5 (43-80)||(25101629-25101666)
chr5 (43-80)||(25160722-25160759)
[»] chr8 (11 HSPs)
chr8 (11-105)||(41958139-41958233)
chr8 (30-141)||(44436481-44436592)
chr8 (149-215)||(35840628-35840694)
chr8 (100-145)||(44436405-44436450)
chr8 (149-228)||(40841297-40841374)
chr8 (43-92)||(40841226-40841276)
chr8 (43-80)||(22635732-22635769)
chr8 (100-141)||(44436445-44436486)
chr8 (31-80)||(3189127-3189176)
chr8 (43-80)||(22816025-22816062)
chr8 (98-134)||(22816088-22816124)
[»] scaffold1838 (2 HSPs)
scaffold1838 (11-141)||(545-675)
scaffold1838 (10-54)||(670-715)
[»] chr6 (5 HSPs)
chr6 (14-105)||(10751280-10751371)
chr6 (11-93)||(23260331-23260413)
chr6 (14-105)||(34636582-34636673)
chr6 (43-80)||(13773132-13773169)
chr6 (43-80)||(32449966-32450004)
[»] scaffold0013 (2 HSPs)
scaffold0013 (98-207)||(242848-242957)
scaffold0013 (43-80)||(242744-242781)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 33007368 - 33007609
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacacc 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||||||||    
T  33007368 cacataatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgattatgaaaatgtagactaaaatccaccacgaagacacc 33007467  T
Q  111 acacataatataattataacccgcaactaagacactcaaatgcaatatcatatttacccgccacaaaaacactacacagaaataattatatatctcatat 210  Q
    ||| | ||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||| ||||||||| |||||||||||||||||||||    
T  33007468 acatagaatataattataacccgcaactaagacactccaatgcaatatgatatttaccagccacaaaagcactacacacaaataattatatatctcatat 33007567  T
Q  211 caccaaaaacataatcaatgataacattttcaataaaactca 252  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  33007568 caccaaaaacataatcaatgacaacattttcaataaaactca 33007609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 43407087 - 43407205
Alignment:
Q  14 agaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacaccaca 113  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||| ||||||| || |||||||| |||||||    
T  43407087 agaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcaaactaaaacccgccactaaggcaccaca 43407186  T
Q  114 cataatataattataaccc 132  Q
    || ||||||||||||||||    
T  43407187 caaaatataattataaccc 43407205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 338594 - 338474
Alignment:
Q  14 agaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacaccaca 113  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||  |||||||||||||||| |||| ||||||| || |||||||| |||||||    
T  338594 agaatataattgcaaatcccgccactaaggcaccacacagatgcatatgacatgcatgatcatgaaaatgcaaactaaaacccgccactaaggcaccaca 338495  T
Q  114 cataatataattataacccgc 134  Q
    || ||||||||||||||||||    
T  338494 caaaatataattataacccgc 338474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 9537120 - 9537241
Alignment:
Q  23 ttgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacaccacacataatata 122  Q
    ||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||| || ||||||||| || |||||||| ||||||||| ||||||    
T  9537120 ttgcaattcccgccactaaggcaccacacaaatgcatatgccatgcatgatcatgaaaatgtagactaaaacccgccactaaggcaccacacagaatata 9537219  T
Q  123 attataacccgcaactaagaca 144  Q
    ||||||||||||  ||||||||    
T  9537220 attataacccgccgctaagaca 9537241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 8422051 - 8421921
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacacc 110  Q
    |||||||||||||||||||| |||||||||| |||||||| |||||||||||| |||||||||||||||| |||||||||||| || || ||||| ||||    
T  8422051 cacagaatataattgcaatttccgccactaaggcaccacatagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccgctaaggcacc 8421952  T
Q  111 acacataatataattataacccgcaactaag 141  Q
    ||||| |||||||| | |||| || ||||||    
T  8421951 acacagaatataatcacaacctgccactaag 8421921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 37666898 - 37666989
Alignment:
Q  14 agaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaag 105  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||||||||||||| ||||||||    
T  37666898 agaatataattgcaattcccgccactaaggcaccacacagatgcatatgacatgcatgatcatgaaaatgcagactaaaatccgccactaag 37666989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 215
Target Start/End: Complemental strand, 6836340 - 6836222
Alignment:
Q  98 ccactaagacaccacacataatataattataacccgcaactaagacactcaaatgcaatatcatatttacccgccacaaaaacactacacag-aaataat 196  Q
    |||||||| ||||||||| ||||||||  |||||||| ||| || |||   |||||||||| ||||||||||||||||||  ||| ||| || ||||| |    
T  6836340 ccactaaggcaccacacagaatataatagtaacccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacatagaaaatatt 6836241  T
Q  197 tatatatctcatatcacca 215  Q
    ||||||||||| |||||||    
T  6836240 tatatatctcacatcacca 6836222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 18472637 - 18472674
Alignment:
Q  43 gcaccacacagatgcatatgctatgcatgatcatgaaa 80  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18472637 gcaccacacagatgcatatgctatgcatgatcatgaaa 18472674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 16075211 - 16075157
Alignment:
Q  31 cccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgca 85  Q
    |||||||||||  |||||||||||||||| ||| |||||||||||||||| ||||    
T  16075211 cccgccactaagacaccacacagatgcatttgccatgcatgatcatgaaaatgca 16075157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 25921976 - 25921908
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaa 80  Q
    |||| |||||||||| ||| ||| ||||||| ||||||||||||||||||||  ||| ||||||||||||    
T  25921976 cacaaaatataattgtaat-cccaccactaaggcaccacacagatgcatatgtcatgtatgatcatgaaa 25921908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 35761753 - 35761813
Alignment:
Q  43 gcaccacacagatgcatatgct-atgcatgatcatgaaagtgcagactaaaatccaccact 102  Q
    |||||||||||||||||||||| |||||||||||||||| || ||| |||| ||| |||||    
T  35761753 gcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagattaaattccgccact 35761813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 6836433 - 6836396
Alignment:
Q  43 gcaccacacagatgcatatgctatgcatgatcatgaaa 80  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  6836433 gcaccacacagatgcatatgccatgcatgatcaggaaa 6836396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 18292411 - 18292541
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacacc 110  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| || |||||||| ||||    
T  18292411 cacagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccactaaggcacc 18292510  T
Q  111 acacataatataattataacccgcaactaag 141  Q
    ||||| |||||||||||||||||| ||||||    
T  18292511 acacaaaatataattataacccgccactaag 18292541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 40729146 - 40729277
Alignment:
Q  13 cagaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacaccac 112  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| || |||||||| ||||||    
T  40729146 cagaatataattgcaatttccaccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccactaaggcaccac 40729245  T
Q  113 acataatataattataacccgcaactaagaca 144  Q
    ||| ||||||||||||||| || |||||||||    
T  40729246 acagaatataattataacctgccactaagaca 40729277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 40447967 - 40447847
Alignment:
Q  14 agaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacaccaca 113  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||  |||||||||||||||| |||| ||||||| || |||||||| |||||||    
T  40447967 agaatataattgcaaatcccgccactaaggcaccacacagatgcatatgacatgcatgatcatgaaaatgcaaactaaaacccgccactaaggcaccaca 40447868  T
Q  114 cataatataattataacccgc 134  Q
    || ||||||||||||||||||    
T  40447867 caaaatataattataacccgc 40447847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 34397536 - 34397664
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacacc 110  Q
    |||||||||||||||||||| | |||||||| ||||||||||||||||||| | |||||||||||||||  |||||||||||| || |||||||| ||||    
T  34397536 cacagaatataattgcaatttctgccactaaggcaccacacagatgcatataccatgcatgatcatgaa--tgcagactaaaacccgccactaaggcacc 34397633  T
Q  111 acacataatataattataacccgcaactaag 141  Q
    ||||| |||||||||||||||||| ||||||    
T  34397634 acacagaatataattataacccgccactaag 34397664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 112
Target Start/End: Original strand, 41339973 - 41340071
Alignment:
Q  14 agaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacaccac 112  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||| |||||||| || ||||||||| || |||||||| ||||||    
T  41339973 agaatataattgcaattcccgccactaaggcaccacacaggtgcatatgccatgcatggtcatgaaaatgaagactaaaacccgccactaaggcaccac 41340071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 228
Target Start/End: Complemental strand, 44788942 - 44788812
Alignment:
Q  98 ccactaagacaccacacataatataattataacccgcaactaagacactcaaatgcaatatcatatttacccgccacaaaaacactacac-agaaataat 196  Q
    |||||||| ||||||||| ||||||||  |||||||| ||| || |||   |||||||||| ||||||||||||||| ||| ||| |||| | |||||||    
T  44788942 ccactaaggcaccacacaaaatataatagtaacccgccacttaggcacaacaatgcaatatgatatttacccgccac-aaagcaccacacaacaaataat 44788844  T
Q  197 tatatatctcatatcaccaaaaacataatcaa 228  Q
    ||||||||||| |||||||  ||||| |||||    
T  44788843 tatatatctcacatcaccatgaacatgatcaa 44788812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 35670502 - 35670538
Alignment:
Q  44 caccacacagatgcatatgctatgcatgatcatgaaa 80  Q
    |||||||||||||||||||||||||||||||||||||    
T  35670502 caccacacagatgcatatgctatgcatgatcatgaaa 35670538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 12774141 - 12774178
Alignment:
Q  43 gcaccacacagatgcatatgctatgcatgatcatgaaa 80  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  12774141 gcaccacacagatgcatatgcgatgcatgatcatgaaa 12774178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 28266832 - 28266910
Alignment:
Q  14 agaatataattgcaattcccgccactaaagca-ccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaa 92  Q
    |||||||||||| ||| |||||||||||  || ||||| |||||||||||| |||||||||||| ||| || ||||||||    
T  28266832 agaatataattgtaat-cccgccactaagacatccacatagatgcatatgccatgcatgatcattaaaatgaagactaaa 28266910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 44789041 - 44789004
Alignment:
Q  43 gcaccacacagatgcatatgctatgcatgatcatgaaa 80  Q
    |||||||||||||||||||||  |||||||||||||||    
T  44789041 gcaccacacagatgcatatgccttgcatgatcatgaaa 44789004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 10288511 - 10288629
Alignment:
Q  14 agaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacaccaca 113  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||| ||||||| || |||||||| |||||||    
T  10288511 agaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcaaactaaaacccgccactaaggcaccaca 10288610  T
Q  114 cataatataattataaccc 132  Q
    || ||||||||||||||||    
T  10288611 caaaatataattataaccc 10288629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 49170023 - 49170150
Alignment:
Q  16 aatataattgcaattcccg-ccactaaagca-ccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacaccaca 113  Q
    ||||||||||||||||||| ||||||| ||| |||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  49170023 aatataattgcaattcccggccactaaggcatccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaatccgccactaagacaccaca 49170122  T
Q  114 cataatataattataacccgcaactaag 141  Q
    || |||||||||| ||||||| ||||||    
T  49170123 cagaatataattacaacccgccactaag 49170150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 40106299 - 40106195
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacacc 110  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| ||||    
T  40106299 cacagaatataattgcgattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaatccgccactaaggcacc 40106200  T
Q  111 acaca 115  Q
    |||||    
T  40106199 acaca 40106195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 12911410 - 12911533
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacacc 110  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||||||||| || |||||| |||||| |||||||||||| || ||||||||  |||    
T  12911410 cacagaatataattgcaattcctaccactaaggcaccacacagatgcatatgccatacatgattatgaaaatgcagactaaaacccgccactaaggtacc 12911509  T
Q  111 acacataatataattataacccgc 134  Q
    ||||| ||||||||||||||||||    
T  12911510 acacagaatataattataacccgc 12911533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 12196413 - 12196517
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacacc 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||| |||||||||||| ||||||||||| ||| |||||||| ||||    
T  12196413 cacagaatataattgcaattcccgccactaaggcaccacacagatgaatatgccatgtatgatcatgaaaatgcagactaaagtccgccactaaggcacc 12196512  T
Q  111 acaca 115  Q
    |||||    
T  12196513 acaca 12196517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 11036063 - 11036145
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcatatgct-atgcatgatcatgaaagtgcagactaaa 92  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||| || ||||||||    
T  11036063 cacagaatataattgcaattcccgccactaaggcaccacagagatgcatatgctaatgcatgatcatgaaaatgaagactaaa 11036145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 15873695 - 15873786
Alignment:
Q  14 agaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaag 105  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| || ||||||| |||| ||||||| || ||||||||    
T  15873695 agaatataattgcaaatcccgccactaaggcaccacacagatgcatatgccatgcacgaacatgaaaatgcacactaaaacccgccactaag 15873786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 9993678 - 9993612
Alignment:
Q  149 aatgcaatatcatatttacccgccacaaaaacactacacagaaataattatatatctcatatcacca 215  Q
    |||||||||| |||||||||| |||||||  ||| |||||||||||||||||||||||| |||||||    
T  9993678 aatgcaatatgatatttacccaccacaaaggcaccacacagaaataattatatatctcacatcacca 9993612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 22078133 - 22078083
Alignment:
Q  43 gcaccacacagatgcatatgct-atgcatgatcatgaaagtgcagactaaa 92  Q
    |||||||||||||||||||||| |||||||||||||||| || ||||||||    
T  22078133 gcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagactaaa 22078083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 48653547 - 48653583
Alignment:
Q  44 caccacacagatgcatatgctatgcatgatcatgaaa 80  Q
    ||||||||||||||||||| |||||||||||||||||    
T  48653547 caccacacagatgcatatgttatgcatgatcatgaaa 48653583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 11036166 - 11036244
Alignment:
Q  149 aatgcaatatcatatttacccgccacaaaaacactacacagaaataattatatatctcatatcaccaaaaacataatcaa 228  Q
    |||||||||| |||||||| ||||||||   ||| |||||||||||| ||||||||||| |||||||  ||||| |||||    
T  11036166 aatgcaatatgatatttactcgccacaagg-caccacacagaaataactatatatctcacatcaccatgaacatgatcaa 11036244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 21491196 - 21491233
Alignment:
Q  43 gcaccacacagatgcatatgct-atgcatgatcatgaa 79  Q
    |||||||||||||||||||||| |||||||||||||||    
T  21491196 gcaccacacagatgcatatgctaatgcatgatcatgaa 21491233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 40106338 - 40106294
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagca-ccacacaga 54  Q
    |||||||||||||||||||||| |||||||| ||| |||||||||    
T  40106338 cacagaatataattgcaattcctgccactaaggcatccacacaga 40106294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 14 - 132
Target Start/End: Original strand, 7336414 - 7336532
Alignment:
Q  14 agaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacaccaca 113  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||| ||||||| || |||||||| |||||||    
T  7336414 agaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcaaactaaaacccgccactaaggcaccaca 7336513  T
Q  114 cataatataattataaccc 132  Q
    || ||||||||||||||||    
T  7336514 caaaatataattataaccc 7336532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 5004440 - 5004531
Alignment:
Q  14 agaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaag 105  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| || ||||||||    
T  5004440 agaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccactaag 5004531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 16975809 - 16975727
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaa 93  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||| |||||||||||| ||||||||||||    
T  16975809 cacagaatataattgcaattcccgccactatggcaccacacagatgcatatgccatggatgatcatgaaaatgcagactaaaa 16975727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 43277763 - 43277832
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaa 80  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||| ||||||||||||    
T  43277763 cacagaatataattgcaattcccgccactaaggcaccacacagatgcatatgtcatgtatgatcatgaaa 43277832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 46404321 - 46404412
Alignment:
Q  14 agaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaag 105  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||  | ||||||| |||| ||||||| || ||||||||    
T  46404321 agaatataattgcaaatcccgccactaaggcaccacacagatgcatatgccatgcacaaacatgaaaatgcacactaaaacccgccactaag 46404412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 228
Target Start/End: Original strand, 17542468 - 17542599
Alignment:
Q  98 ccactaagacaccacacataatataattataacccgcaactaagacactcaaatgcaatatcatatttacccgccacaaaaacactacacagaaa-taat 196  Q
    |||||||| ||||||||| ||||||||  |||||||| ||| ||||||   |||||||||| ||||||||| ||||||||  ||| ||||||||| ||||    
T  17542468 ccactaaggcaccacacagaatataatagtaacccgccacttagacacaacaatgcaatatgatatttacctgccacaaaggcaccacacagaaaataat 17542567  T
Q  197 tatatatctcatatcaccaaaaacataatcaa 228  Q
    ||||||||| | |||||||  ||||| |||||    
T  17542568 tatatatctaacatcaccatgaacatgatcaa 17542599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 9104564 - 9104494
Alignment:
Q  152 gcaatatcatatttacccgccacaaaaacactacacagaaataattatatatctcatatcaccaaaaacat 222  Q
    ||||||| ||||||||| ||||||||  ||| |||||||||||||||||||||||| |||||||| |||||    
T  9104564 gcaatatgatatttacctgccacaaaggcaccacacagaaataattatatatctcacatcaccaagaacat 9104494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 9104638 - 9104588
Alignment:
Q  43 gcaccacacagatgcatatgct-atgcatgatcatgaaagtgcagactaaa 92  Q
    |||||||||||||||||||||| |||||||||||||||| || ||||||||    
T  9104638 gcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagactaaa 9104588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 8731269 - 8731203
Alignment:
Q  37 actaaagcaccacacagatgcatatgcta-tgcatgatcatgaaagtgcagactaaaatccaccact 102  Q
    ||||| |||||||| |||||  ||||||| ||||||||||||||| || |||||||| |||||||||    
T  8731269 actaaggcaccacatagatgtttatgctaatgcatgatcatgaaaatgaagactaaattccaccact 8731203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 9083156 - 9083090
Alignment:
Q  37 actaaagcaccacacagatgcatatgcta-tgcatgatcatgaaagtgcagactaaaatccaccact 102  Q
    ||||| |||||||| |||||  ||||||| ||||||||||||||| || |||||||| |||||||||    
T  9083156 actaaggcaccacatagatgtttatgctaatgcatgatcatgaaaatgaagactaaattccaccact 9083090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 55162643 - 55162514
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacacc 110  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||  ||| ||| ||||    
T  55162643 cacagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaatccgtcaccaaggcacc 55162544  T
Q  111 acacataatataattataacccgcaactaa 140  Q
    ||||| |||||||| | ||||||| |||||    
T  55162543 acacagaatataatcacaacccgccactaa 55162514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 40459437 - 40459317
Alignment:
Q  14 agaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacaccaca 113  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||  |||||| || |||||||| ||| |||    
T  40459437 agaatataattgcaaatcccgccactaaggcaccacacagatgcatatgacatgcatgatcatgaaaatgcaacctaaaacccgccactaaggcacaaca 40459338  T
Q  114 cataatataattataacccgc 134  Q
     | ||||||||||||||||||    
T  40459337 tagaatataattataacccgc 40459317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 28968956 - 28969076
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcat-----atgctatgcatgatcatgaaagtgcagactaaaatccaccactaag 105  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||     |||| |||||||||||||||| |||||| ||||| | |||||||||    
T  28968956 cacaaaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgccatgcatgatcatgaaaatgcagattaaaacctaccactaag 28969055  T
Q  106 acaccacacataatataatta 126  Q
     ||||||||| ||||||||||    
T  28969056 gcaccacacagaatataatta 28969076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 228
Target Start/End: Complemental strand, 69722 - 69591
Alignment:
Q  98 ccactaagacaccacacataatataattataacccgcaactaagacactcaaatgcaatatcatatttacccgccacaaaaacactacacag-aaataat 196  Q
    |||||||| ||||||||| ||||||||  |||||||| ||| || |||   |||||||||| ||||||||||||||||||  ||| |||||| |||||||    
T  69722 ccactaaggcaccacacagaatataatagtaacccgccacttaggcacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaaataat 69623  T
Q  197 tatatatctcatatcaccaaaaacataatcaa 228  Q
    ||||||||||| |||||||  ||||| |||||    
T  69622 tatatatctcacatcaccatgaacatgatcaa 69591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 13653024 - 13652932
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgc-agactaaaatccaccact 102  Q
    |||| |||||||||||||||| ||||||||| |||||||||| |||||||| | |||||||||||||||| ||| ||||||||| || |||||    
T  13653024 cacaaaatataattgcaattctcgccactaaggcaccacacaaatgcatataccatgcatgatcatgaaaatgcaagactaaaacccgccact 13652932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 13661149 - 13661057
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgc-agactaaaatccaccact 102  Q
    |||| |||||||||||||||| ||||||||| |||||||||| |||||||| | |||||||||||||||| ||| ||||||||| || |||||    
T  13661149 cacaaaatataattgcaattctcgccactaaggcaccacacaaatgcatataccatgcatgatcatgaaaatgcaagactaaaacccgccact 13661057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 55162681 - 55162638
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacaga 54  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  55162681 cacagaatataattgcaattcccgccactaaggcaccacacaga 55162638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 69821 - 69784
Alignment:
Q  43 gcaccacacagatgcatatgctatgcatgatcatgaaa 80  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  69821 gcaccacacagatgcatatgccatgcatgatcatgaaa 69784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 2761801 - 2761846
Alignment:
Q  35 ccactaaagcaccacacagatgcatatgctatgcatgatcatgaaa 80  Q
    ||||||| |||||||||| |||||||||| ||||||||||||||||    
T  2761801 ccactaaggcaccacacaaatgcatatgccatgcatgatcatgaaa 2761846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 49499560 - 49499523
Alignment:
Q  43 gcaccacacagatgcatatgct-atgcatgatcatgaa 79  Q
    |||||||||||||||||||||| |||||||||||||||    
T  49499560 gcaccacacagatgcatatgctaatgcatgatcatgaa 49499523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 30910287 - 30910165
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacacc 110  Q
    ||||||||||||||||||||||||| |||||   ||||||||||||||||||| ||||||||||||| || |||||||| |||||| |||||||| ||||    
T  30910287 cacagaatataattgcaattcccgctactaagagaccacacagatgcatatgccatgcatgatcatggaaatgcagact-aaatccgccactaaggcacc 30910189  T
Q  111 acacataatataattataacccgc 134  Q
    ||||||||||||||||||||||||    
T  30910188 acacataatataattataacccgc 30910165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 40691364 - 40691234
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacacc 110  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||||||||||  ||||||||||||||| |||||||||||| ||  ||||||| ||||    
T  40691364 cacagaatataattgcaatttccgccaataaggcaccacacagatgcatatgccttgcatgatcatgaaaatgcagactaaaacccgtcactaaggcacc 40691265  T
Q  111 acacataatataattataacccgcaactaag 141  Q
    |||||||||||||| | ||||||| ||||||    
T  40691264 acacataatataatcacaacccgccactaag 40691234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 38001463 - 38001343
Alignment:
Q  17 atataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacaccacacat 116  Q
    |||||||||||||||||||||||| | |||||||||||||||||||  ||||  |||||||||| |||||| ||||| || ||||||||||||||||||     
T  38001463 atataattgcaattcccgccactaga-caccacacagatgcatatgtcatgc--gatcatgaaaatgcagattaaaacccgccactaagacaccacacag 38001367  T
Q  117 aatataattataacccgcaactaa 140  Q
    |||||||||||||| ||| |||||    
T  38001366 aatataattataactcgccactaa 38001343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 537306 - 537215
Alignment:
Q  14 agaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaag 105  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| || ||||||| |||| ||||||| || ||||||||    
T  537306 agaatataattgcaaatcccgccactaaggcaccacacagatgcatatgccatgcacgaacatgaaaatgcacactaaaacccgccactaag 537215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 228
Target Start/End: Complemental strand, 6309090 - 6308962
Alignment:
Q  98 ccactaagacaccacacataatataattataacccgcaactaagacactcaaatgcaatatcatatttacccgccacaaaaacactacacag-aaataat 196  Q
    |||||||||||||||||| ||||||||  |||||||| ||  || |||   |||||||||| ||||||||||||||||||  ||| |||||| |||||||    
T  6309090 ccactaagacaccacacagaatataatagtaacccgccac--ag-cacaacaatgcaatatgatatttacccgccacaaaggcaccacacagaaaataat 6308994  T
Q  197 tatatatctcatatcaccaaaaacataatcaa 228  Q
    ||||||||||| |||||||  ||||| |||||    
T  6308993 tatatatctcacatcaccatgaacatgatcaa 6308962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 46 - 80
Target Start/End: Complemental strand, 42861869 - 42861835
Alignment:
Q  46 ccacacagatgcatatgctatgcatgatcatgaaa 80  Q
    |||||||||||||||||||||||||||||||||||    
T  42861869 ccacacagatgcatatgctatgcatgatcatgaaa 42861835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 6309224 - 6309188
Alignment:
Q  44 caccacacagatgcatatgctatgcatgatcatgaaa 80  Q
    |||||||||||||||||||| ||||||||||||||||    
T  6309224 caccacacagatgcatatgccatgcatgatcatgaaa 6309188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 41
Target Start/End: Complemental strand, 38001508 - 38001478
Alignment:
Q  11 cacagaatataattgcaattcccgccactaa 41  Q
    |||||||||||||||||||||||||||||||    
T  38001508 cacagaatataattgcaattcccgccactaa 38001478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 104677 - 104644
Alignment:
Q  99 cactaagacaccacacataatataattataaccc 132  Q
    ||||||||||||||||||||||||||| ||||||    
T  104677 cactaagacaccacacataatataattgtaaccc 104644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 25101629 - 25101666
Alignment:
Q  43 gcaccacacagatgcatatgctatgcatgatcatgaaa 80  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  25101629 gcaccacacagatgcatataccatgcatgatcatgaaa 25101666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 25160722 - 25160759
Alignment:
Q  43 gcaccacacagatgcatatgctatgcatgatcatgaaa 80  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  25160722 gcaccacacagatgcatataccatgcatgatcatgaaa 25160759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 41958139 - 41958233
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaag 105  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| ||| |||||||    
T  41958139 cacagaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccatcactaag 41958233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 44436592 - 44436481
Alignment:
Q  30 tcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacaccacacataatataattataa 129  Q
    |||||||||  | ||||||||||||||||||||| | |||||||||||||| |  ||||||||| ||||||||||| ||||||||| |||||||||||||    
T  44436592 tcccgccacacaggcaccacacagatgcatatgccaagcatgatcatgaaaatagagactaaaacccaccactaaggcaccacacagaatataattataa 44436493  T
Q  130 cccgcaactaag 141  Q
    ||||||||||||    
T  44436492 cccgcaactaag 44436481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 215
Target Start/End: Complemental strand, 35840694 - 35840628
Alignment:
Q  149 aatgcaatatcatatttacccgccacaaaaacactacacagaaataattatatatctcatatcacca 215  Q
    |||||||||| ||||||||||||||||||  ||| |||||||||||||||||||||||| |||||||    
T  35840694 aatgcaatatgatatttacccgccacaaaggcacgacacagaaataattatatatctcacatcacca 35840628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 44436450 - 44436405
Alignment:
Q  100 actaagacaccacacataatataattataacccgcaactaagacac 145  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||    
T  44436450 actaaggcaccacacagaatataattataacccgcaactaagacac 44436405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 40841297 - 40841374
Alignment:
Q  149 aatgcaatatcatatttacccgccacaaaaacactacacagaaataattatatatctcatatcaccaaaaacataatcaa 228  Q
    |||||||||| |||||||||||||||||| |||  | |||||||||||  ||||||||| |||||||| ||||| |||||    
T  40841297 aatgcaatatgatatttacccgccacaaagacagcatacagaaataat--tatatctcacatcaccaagaacatgatcaa 40841374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 40841226 - 40841276
Alignment:
Q  43 gcaccacacagatgcatatgct-atgcatgatcatgaaagtgcagactaaa 92  Q
    |||||||||||||||||||||| |||||||||||||||| || ||||||||    
T  40841226 gcaccacacagatgcatatgctaatgcatgatcatgaaaatgaagactaaa 40841276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 22635732 - 22635769
Alignment:
Q  43 gcaccacacagatgcatatgctatgcatgatcatgaaa 80  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  22635732 gcaccacacagatgcatatgccatgcatgatcatgaaa 22635769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 44436486 - 44436445
Alignment:
Q  100 actaagacaccacacataatataattataacccgcaactaag 141  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  44436486 actaaggcaccacacagaatataattataacccgcaactaag 44436445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 3189127 - 3189176
Alignment:
Q  31 cccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaa 80  Q
    ||||||||  |||||||||||| |||||||||  ||||||||||||||||    
T  3189127 cccgccacacaagcaccacacaaatgcatatgtcatgcatgatcatgaaa 3189176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 22816025 - 22816062
Alignment:
Q  43 gcaccacacagatgcatatgctatgcatgatcatgaaa 80  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  22816025 gcaccgcacagatgcatatgccatgcatgatcatgaaa 22816062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 22816088 - 22816124
Alignment:
Q  98 ccactaagacaccacacataatataattataacccgc 134  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  22816088 ccactaaggcaccacacataatataattgtaacccgc 22816124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 141
Target Start/End: Complemental strand, 675 - 545
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaagacacc 110  Q
    |||||| |||||||||||||||| ||||||| ||| |||||| ||||||||||  | ||||||||||||| ||||||||||||  | |||||||| ||||    
T  675 cacagactataattgcaattcccaccactaaggcatcacacaaatgcatatgcctttcatgatcatgaaaatgcagactaaaactcgccactaaggcacc 576  T
Q  111 acacataatataattataacccgcaactaag 141  Q
    ||||| |||||||||||||||||| ||||||    
T  575 acacagaatataattataacccgccactaag 545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 715 - 670
Alignment:
Q  10 gcacagaatataattgcaattcccgccactaaagca-ccacacaga 54  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||    
T  715 gcacagaatataattgcaattcccgccactaaggcatccacacaga 670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 10751280 - 10751371
Alignment:
Q  14 agaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaag 105  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| || ||||||||    
T  10751280 agaatataattgtaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaacccgccactaag 10751371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 23260331 - 23260413
Alignment:
Q  11 cacagaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaa 93  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  23260331 cacaaaatataattgcaattcccgccactaaggcaccacacagatgcatatgccatgcatgatcatgaaaatgcagactaaaa 23260413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 34636673 - 34636582
Alignment:
Q  14 agaatataattgcaattcccgccactaaagcaccacacagatgcatatgctatgcatgatcatgaaagtgcagactaaaatccaccactaag 105  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| || ||||||| |||| ||||||| || ||||||||    
T  34636673 agaatataattgcaaatcccgccactaaggcaccacacagatgcatatgccatgcacgaacatgaaaatgcacactaaaacccgccactaag 34636582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 13773132 - 13773169
Alignment:
Q  43 gcaccacacagatgcatatgctatgcatgatcatgaaa 80  Q
    |||||||||||||| |||||||||||||||||||||||    
T  13773132 gcaccacacagatgtatatgctatgcatgatcatgaaa 13773169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 32449966 - 32450004
Alignment:
Q  43 gcaccacacagatgcatatgct-atgcatgatcatgaaa 80  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  32449966 gcaccacacagatgcatatgctaatgcatgatcatgaaa 32450004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 207
Target Start/End: Original strand, 242848 - 242957
Alignment:
Q  98 ccactaagacaccacacataatataattataacccgcaactaagacactcaaatgcaatatcatatttacccgccacaaaaacactacacagaaataatt 197  Q
    |||| ||| ||||||||| ||||||||  ||||| || |||||| |||   |||||||||| ||||||||||| ||||||  ||| ||||| ||||||||    
T  242848 ccacgaaggcaccacacagaatataatagtaacctgccactaaggcacaacaatgcaatatgatatttacccgtcacaaaggcaccacacataaataatt 242947  T
Q  198 atatatctca 207  Q
    ||||||||||    
T  242948 atatatctca 242957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 242744 - 242781
Alignment:
Q  43 gcaccacacagatgcatatgctatgcatgatcatgaaa 80  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  242744 gcaccacacatatgcatatgctatgcaagatcatgaaa 242781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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