View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3458_low_2 (Length: 449)
Name: NF3458_low_2
Description: NF3458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3458_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 433
Target Start/End: Complemental strand, 41706619 - 41706199
Alignment:
| Q |
13 |
aatatcaaagccatcatcttctggagtagacttcagtccacccctgatagcaatggtagtcgttgtcgccgccgcatttgtcctcgtaacctactcccgc |
112 |
Q |
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| T |
41706619 |
aatatcaaagccatcatcttctggagtagacttcagtccacccctgatagcaatggtagtcgttgtcgccgccgcatttgtcctcgtaacctactcccgc |
41706520 |
T |
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| Q |
113 |
ctcatcacccgccatctttcccctcccatccaccgtctcattcaacgcttccaccgnnnnnnnnnnnnnnnnnnnnnnntaggcgatattgaatcccttc |
212 |
Q |
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| T |
41706519 |
ctcatcacccgccatctttcccctcccatccaccgtctcattcaacgcttccaccgtcctcctccctcctcctcctccttaggcgatattgaatcccttc |
41706420 |
T |
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| Q |
213 |
aatacgactcaacatctttcgaaacaccactcacctacggtttagacgaatctatcatcaaaacaatcccattctttatctacacaactaaatacgaaca |
312 |
Q |
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| T |
41706419 |
aatacgactcaacatctttcgaaacaccactcacctacggtttagacgaatctatcatcaaaacaatcccattctttatctacacaactaaatacgaaca |
41706320 |
T |
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| Q |
313 |
agaatctcgccgtgactgtgccgtttgtttactcgaatttgaagatcacgattacgttcgtactcttcctctctgttcccacacttttcatcttgactgc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41706319 |
agaatctcgccgtgactgtgccgtttgtttactcgaatttgaagatcacgattacgttcgtactcttcctctctgttcccacacttttcatcttgactgc |
41706220 |
T |
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| Q |
413 |
attgatgcttggcttcgttca |
433 |
Q |
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| T |
41706219 |
attgatgcttggcttcgttca |
41706199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 428
Target Start/End: Original strand, 35356824 - 35356890
Alignment:
| Q |
362 |
gattacgttcgtactcttcctctctgttcccacacttttcatcttgactgcattgatgcttggcttc |
428 |
Q |
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| T |
35356824 |
gattacattcgcactctccctctttgttcccacactttccatctcgcttgcattgatgcttggcttc |
35356890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 433
Target Start/End: Complemental strand, 47906078 - 47906013
Alignment:
| Q |
368 |
gttcgtactcttcctctctgttcccacacttttcatcttgactgcattgatgcttggcttcgttca |
433 |
Q |
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| T |
47906078 |
gttcgtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttca |
47906013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 433
Target Start/End: Complemental strand, 47908850 - 47908785
Alignment:
| Q |
368 |
gttcgtactcttcctctctgttcccacacttttcatcttgactgcattgatgcttggcttcgttca |
433 |
Q |
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|||||||| || ||||| || ||||||| |||||||| || |||||||||| ||||||||||||| |
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| T |
47908850 |
gttcgtaccctccctctttgctcccacatttttcatcacgattgcattgatgtttggcttcgttca |
47908785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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