View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3458_low_4 (Length: 386)
Name: NF3458_low_4
Description: NF3458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3458_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 368
Target Start/End: Complemental strand, 45014695 - 45014323
Alignment:
| Q |
11 |
cagagacaacatcatatgcatctccaaatctataatttgagttaggaagttgcttcaccaagtcatctattagttcacttgaagctttattaaagctaag |
110 |
Q |
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| T |
45014695 |
cagagacaacatcatatgcatctccaaatctataatttgagttaggaagttgcttcaccaagtcatctattagttcacttgaagctttattaaagctaag |
45014596 |
T |
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| Q |
111 |
agccagtttgtttacactttctcgacaatttcctgttgtagtaagtaccctttgaagtggaatgcatcccattggacccagcccaaaaagctgcaattgc |
210 |
Q |
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| T |
45014595 |
agccagtttgtttacactttctcgacaatttcctgttgtagtaagtaccctttgaagtggaatgcatcccattggacccagcccaaaaagctgcaattgc |
45014496 |
T |
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| Q |
211 |
cttgctcctaaactatgtagtagctaaaaacataaacaaatgtaaatactcattattatacttaa-------------------gacttaaaacacactt |
291 |
Q |
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| T |
45014495 |
cttgctcctaaactatgtagtagctaaaaacataaacaaatgtaaatactcattattatacttaagactctttcctaaaaaaaagacttaaaacacactt |
45014396 |
T |
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| Q |
292 |
agatgcaaaacaatgaagcatgattgattattttagagtgaactcaataaacctttagttgtcttcttagtgttcct |
368 |
Q |
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| T |
45014395 |
agatgcaaaacaattaagca----tgattattttagagtgaactcaataaacctttagttgtcttcttagtgttcct |
45014323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 11666614 - 11666833
Alignment:
| Q |
19 |
acatcatatgcatctccaaatctataatttgagttaggaagttgcttcaccaagtcatctattagttcacttgaagctttattaaagctaagagccagtt |
118 |
Q |
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| T |
11666614 |
acatcataagcatcaccaaatctgtagcttgcattgggaagttgcttccccaaatcatttactaccttacttgaagctttgttaaagctaagagctaact |
11666713 |
T |
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| Q |
119 |
tgtttacactttctcgacaatttcctgttgtagtaagtaccctttgaagtggaatgcatcccattggacccagcccaaaaagctgcaattgccttgctcc |
218 |
Q |
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| T |
11666714 |
tgtttgttttttcttgacaattcccagatgtactaagcactctttgaaggggaatacagcccattgggccaagcccaaacaccatcagttgccttgctcc |
11666813 |
T |
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| Q |
219 |
taaactatgtagtagctaaa |
238 |
Q |
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|| ||||| |||| ||||| |
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| T |
11666814 |
taggctatgcagtacctaaa |
11666833 |
T |
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