View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3458_low_5 (Length: 367)
Name: NF3458_low_5
Description: NF3458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3458_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 20 - 354
Target Start/End: Original strand, 2462362 - 2462696
Alignment:
| Q |
20 |
caagattgttttgtttacttaaaagcttagttttgttggtttatataaatactttggcttatttttagtagcagaaacgaccaaaaccagcaattgaaca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
2462362 |
caagattgttttgtttacttaaaagcttagttttgttggtttatataaatactttggcttattgttagtagcagaaatgaccaaaaccagcaattcaaca |
2462461 |
T |
|
| Q |
120 |
attaatcactaacagttatccccccacccaaacaaactagcagctgattatgctttggataaagggtggcaaaaattttggttgaaagtgattctttggt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2462462 |
attaatcactaacagttatccccccacccaaacaaactagcagctgattatgctttggataaagggtggcaaaaattttggttgaaagtgattctttggt |
2462561 |
T |
|
| Q |
220 |
tgcaattcagtctcttttctgctgttccttgtagactaagaaataattggagtaactgttctataaaacttataggaattcaatttggctatcctcatat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2462562 |
tgcaattcagtctcttttctgctgttccttgtagattaagaaataattggagtaactgttctataaaacttataggaattcaatttggctatcctcatat |
2462661 |
T |
|
| Q |
320 |
ccatagcggataggttaactaaccttggtcactct |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
2462662 |
ccatagcggataggttaactaaccttggtcactct |
2462696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 88 - 226
Target Start/End: Original strand, 2451586 - 2451725
Alignment:
| Q |
88 |
tagcagaaacgaccaaaaccagcaattgaacaattaatcactaacagttatccccccacccaaacaaactagc-agctgattatgctttggataaagggt |
186 |
Q |
| |
|
||||||||||||||||||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
2451586 |
tagcagaaacgaccaaaacaagcaactcaacaattaatcactaacaattatccccccacccaaacaaactagcaagctgattatgctttggagaaagggt |
2451685 |
T |
|
| Q |
187 |
ggcaaaaattttggttgaaagtgattctttggttgcaatt |
226 |
Q |
| |
|
|||||||| ||||||||||| | ||||||||||||||||| |
|
|
| T |
2451686 |
ggcaaaaaatttggttgaaacttattctttggttgcaatt |
2451725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 2451339 - 2451397
Alignment:
| Q |
24 |
attgttttgtttacttaaaagcttagttttgttggtttatataaatactttggcttatt |
82 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2451339 |
attgttttgtttatttaaatgcttagttttgttggtttatataaatacgctggcttatt |
2451397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 2446496 - 2446547
Alignment:
| Q |
30 |
ttgtttacttaaaagcttagttttgttggtttatataaatactttggcttat |
81 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
2446496 |
ttgtctacttaaaagcttatgtttgttggtttatataaatacttgggcttat |
2446547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University