View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3458_low_8 (Length: 304)

Name: NF3458_low_8
Description: NF3458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3458_low_8
NF3458_low_8
[»] chr1 (1 HSPs)
chr1 (13-289)||(33007632-33007906)
[»] chr6 (2 HSPs)
chr6 (23-221)||(13773425-13773620)
chr6 (160-221)||(20555463-20555525)
[»] chr2 (3 HSPs)
chr2 (23-107)||(35670790-35670874)
chr2 (23-76)||(12774440-12774493)
chr2 (27-221)||(28267158-28267347)
[»] chr7 (3 HSPs)
chr7 (23-221)||(48576724-48576920)
chr7 (24-107)||(48653840-48653923)
chr7 (165-289)||(45235265-45235387)
[»] chr4 (1 HSPs)
chr4 (124-222)||(2762019-2762118)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 289
Target Start/End: Original strand, 33007632 - 33007906
Alignment:
Q  13 aatatactcacacataaaaggataatctacctttcatcttttgagttaatatattaagtcttacacacacatacatattcatgagtaataaacaaagttc 112  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33007632 aatatacccacacataaaaggagaatctgcctttcatcttttgagttaatatattaagtcttacccacacatacatattcatgagtaataaacaaagttc 33007731  T
Q  113 attcttatatagttcaccaacctaattctttctgactattgtagaatacattaactattgttggttagctacaataattaattagctatacatatactac 212  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33007732 attcttata--gttcatcaacctaattctttctgactattgtagaatacattaactattgttggttagctacaataattaattagctatacatatactac 33007829  T
Q  213 aaatttagatggttactgatctttttaaccgtacaggaagataatataaagcttaagcaatttttgctccaagaaat 289  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33007830 aaatttagattgttactgatctttttaaccgtacaggaagataaaataaagcttaagcaatttttgctccaagaaat 33007906  T

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Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 23 - 221
Target Start/End: Original strand, 13773425 - 13773620
Alignment:
Q  23 cacataaaaggataatctacctttcatcttttgagttaatatattaagtcttacacacacatacatattcatgagtaataaacaaagttcattcttatat 122  Q
    |||||||||||| | |||||||||||||||||||||| ||||||||||||||||  ||||||||||| |||||||||| |||| || || ||  || |||    
T  13773425 cacataaaaggagagtctacctttcatcttttgagttcatatattaagtcttaccaacacatacatactcatgagtaacaaac-aactttat--ttttat 13773521  T
Q  123 agttcaccaacctaattctttctgactattgtagaatacattaactattgttggttagctacaataattaatt-agctatacatatactacaaatttaga 221  Q
    ||||||  ||| ||||| ||||| ||||  || ||  ||||||||||||||  | ||||||||| |||||||| ||||||||||||||| ||||||||||    
T  13773522 agttcattaacttaattatttct-actagagtggagaacattaactattgtcagctagctacaagaattaattaagctatacatatactgcaaatttaga 13773620  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 20555525 - 20555463
Alignment:
Q  160 acattaactattgttggttagctacaataattaatta-gctatacatatactacaaatttaga 221  Q
    |||||||| |||||  | ||||||||| ||||||||| |||||||||||||| ||||||||||    
T  20555525 acattaaccattgtcagctagctacaagaattaattaagctatacatatactgcaaatttaga 20555463  T

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Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 35670790 - 35670874
Alignment:
Q  23 cacataaaaggataatctacctttcatcttttgagttaatatattaagtcttacacacacatacatattcatgagtaataaacaa 107  Q
    |||||||||||| | |||||||||||||||||||||| ||||||||||||||||  ||||||||||| |||||||||| ||||||    
T  35670790 cacataaaaggagagtctacctttcatcttttgagttcatatattaagtcttaccaacacatacatactcatgagtaacaaacaa 35670874  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 12774440 - 12774493
Alignment:
Q  23 cacataaaaggataatctacctttcatcttttgagttaatatattaagtcttac 76  Q
    |||||||||||| | |||||||||||||||||||||| ||||||||||||||||    
T  12774440 cacataaaaggagagtctacctttcatcttttgagttcatatattaagtcttac 12774493  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 221
Target Start/End: Original strand, 28267158 - 28267347
Alignment:
Q  27 taaaaggataatctacctttcatcttttgagttaatatattaagtctta-cacacacatacatattcatgagtaataaacaaagttcattcttatatagt 125  Q
    |||||||| | |||||||||||||||||||||| |||   ||||||||| || |||| |||||| |||||||||| |||| || || |||||  ||||||    
T  28267158 taaaaggagagtctacctttcatcttttgagttcata---taagtcttaccaaacacgtacatactcatgagtaacaaac-aactttattct--tatagt 28267251  T
Q  126 tcaccaacctaattctttctgactattgtagaatacattaactattgttggttagctacaataattaatt-agctatacatatactacaaatttaga 221  Q
    |||  ||| ||||| ||| | |||   ||| |  ||||||||||||||  | || |||||| |||||||| ||||||||||||||| ||||||||||    
T  28267252 tcattaacttaattattt-ttactggagtatagaacattaactattgtcagctaactacaagaattaattaagctatacatatactgcaaatttaga 28267347  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 23 - 221
Target Start/End: Complemental strand, 48576920 - 48576724
Alignment:
Q  23 cacataaaaggataatctacctttcatcttttgagttaatatattaagtctta-cacacacatacatattcatgagtaataaacaaagttcattcttata 121  Q
    |||||||||||| | |||||||||||||||||||||| ||||||||||||||| || |||||||||||  ||||||||| |||| || || |||||  ||    
T  48576920 cacataaaaggagagtctacctttcatcttttgagttcatatattaagtcttaccaaacacatacatacccatgagtaacaaac-aactttattct--ta 48576824  T
Q  122 tagttcaccaacctaattctttctgactattgtagaatacattaactattgttggttagctacaataattaatt-agctatacatatactacaaatttag 220  Q
    |||||||  ||| ||||| ||||| |||   |||||  ||||||||||||||  | ||||||| | |||||||| ||||||||| ||| | |||||||||    
T  48576823 tagttcattaacttaattatttct-actggagtagagaacattaactattgtcagctagctaccagaattaattaagctatacacataatgcaaatttag 48576725  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 48653840 - 48653923
Alignment:
Q  24 acataaaaggataatctacctttcatcttttgagttaatatattaagtcttacacacacatacatattcatgagtaataaacaa 107  Q
    ||||||||||| | ||||||||||||||||||| || |||||||||||| |||  ||||||||||| |||||||||| ||||||    
T  48653840 acataaaaggagagtctacctttcatcttttgaattcatatattaagtcctaccaacacatacatactcatgagtaacaaacaa 48653923  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 289
Target Start/End: Complemental strand, 45235387 - 45235265
Alignment:
Q  165 aactattgttggttagctacaataattaattagctatacatatactacaaatttagatggttactgatctttttaaccgtacaggaagataatataaagc 264  Q
    |||||||||  ||||||| ||| |||||||||||||||| ||||||||||| ||||   |||||| |||||||||||||| |||| | |||| ||||  |    
T  45235387 aactattgtatgttagctgcaagaattaattagctatacctatactacaaacttagcctgttactaatctttttaaccgttcagggaaataaaataagac 45235288  T
Q  265 ttaagcaatttttgctccaagaaat 289  Q
    |||||||  ||||||| ||||||||    
T  45235287 ttaagca--ttttgctacaagaaat 45235265  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 2762019 - 2762118
Alignment:
Q  124 gttcaccaacctaattctttctgactattgtagaatacattaa-ctattgttggttagctacaataattaattagctatacatatactacaaatttagat 222  Q
    ||||| |||| ||||||||||||||| | |||||| ||||||| |||| ||  ||| ||||||| || | ||||| ||||||||||||||||| ||||||    
T  2762019 gttcatcaacttaattctttctgactctagtagaaaacattaagctatagtccgtttgctacaagaacttattagttatacatatactacaaaattagat 2762118  T

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