View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3459_high_3 (Length: 321)
Name: NF3459_high_3
Description: NF3459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3459_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 172 - 299
Target Start/End: Original strand, 26305987 - 26306113
Alignment:
| Q |
172 |
atcagagccagtacagaacaaattgaatgaaaatatggaacataaacgagtttttacctctgagataaacaccgtttcgagcaagatgaagaacacgaat |
271 |
Q |
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| T |
26305987 |
atcagagccagtacagaacaaattgaatgaaaatatggaacataaacgagtttt-acctctgagataaacaccgtttcgagcaagatgaagaacacgaat |
26306085 |
T |
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| Q |
272 |
gagatgaggatgttctgcatgaccaccc |
299 |
Q |
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| T |
26306086 |
gagatgaggatgttctgcatgaccaccc |
26306113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 26305894 - 26305958
Alignment:
| Q |
112 |
ttgtgtaccgcagttttgaactatgtgtgacagaatacacatttaagaacaaacattacgatcag |
176 |
Q |
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| T |
26305894 |
ttgtgtaccgcagttttgaactatgtgtgacagaatacacatttaagaacaaacattacgatcag |
26305958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 26305828 - 26305898
Alignment:
| Q |
16 |
acagacagaagaatcaattgtgacagtatagttctaaaatgctgacaaatgcagctacaaatatgattgtg |
86 |
Q |
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| T |
26305828 |
acagacaaaagaagcaattgtgacagcatagttctaaaatgctgacaaatgcagctacaaatatgattgtg |
26305898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 781445 - 781510
Alignment:
| Q |
232 |
tgagataaacaccgtttcgagcaagatgaagaacacgaatgagatgaggatgttctgcatgaccac |
297 |
Q |
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| T |
781445 |
tgagataaactccatttgaagctagatgaagaacacgaaagagatgaggctgttctgaatgaccac |
781510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 46209322 - 46209390
Alignment:
| Q |
231 |
ctgagataaacaccgtttcgagcaagatgaagaacacgaatgagatgaggatgttctgcatgaccaccc |
299 |
Q |
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| T |
46209322 |
ctgagataaacatcgttttgagctagacgaagaacactaatgagacgataatgttctgcaaaaccaccc |
46209390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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