View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3459_high_4 (Length: 321)
Name: NF3459_high_4
Description: NF3459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3459_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 312
Target Start/End: Complemental strand, 9206339 - 9206034
Alignment:
| Q |
7 |
tgaagcttctgggcctaattttacggggattgtgtatgagtggtaatcaaaaatgtagtgatgaccttgaatcatgctatcttatttttaattcagtcaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
9206339 |
tgaagcttctgggcctaattttacggggattgtgtattagtggcagccaaaaatgtagtgatgaccttgaatcatgctgtcttatttttaattcaatcaa |
9206240 |
T |
|
| Q |
107 |
aataatcaattgtccaaaattcttgtccatattatcattggttgctgcagaattgagttaaaggttgatgcaaatctcggttgtttgcgaggaagaaggc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
9206239 |
aataatcaattgtccaaaattcttgtccatattaacattggttgttgcataattgggttaaaggttgatgcaaatctcagttgtttgcgaggaaaaaggc |
9206140 |
T |
|
| Q |
207 |
tccataccaagaataagaggagaggacagggaaaaaggaatgaaatnnnnnnntattaggtgtttgtcggtttatgttaattatcatagaggttcataat |
306 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9206139 |
tccataccaagaataagagaagaggacagaaaaaaaggaatgaaataaaaaaatattaggtgtttgtcggtttatgttaactatcatagaggttcataat |
9206040 |
T |
|
| Q |
307 |
ccaacg |
312 |
Q |
| |
|
|||||| |
|
|
| T |
9206039 |
ccaacg |
9206034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 88 - 312
Target Start/End: Original strand, 9112869 - 9113093
Alignment:
| Q |
88 |
ttatttttaattcagtcaaaataatcaattgtccaaaattcttgtccatattatcattggttgctgcagaattgagttaaaggttgatgcaaatctcggt |
187 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||| ||||||| ||||||||||| |||||||||| || |
|
|
| T |
9112869 |
ttatttttaattcagtcaaaataatcaactgtccaaaattcttgtccatattgtgatttgttgctgtagaattgggttaaaggttgctgcaaatctcagt |
9112968 |
T |
|
| Q |
188 |
tgtttgcgaggaagaaggctccataccaagaataagaggagaggacagggaaaaaggaatgaaatnnnnnnntattaggtgtttgtcggtttatgttaat |
287 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| ||||||||||| |||||||||||| |||| |||||||||||||| |||||||| ||| |
|
|
| T |
9112969 |
tgtttgtgaggaagaaggctccgtaccaagaatgagaggagaggagggggaaaaaggaagaaaataaaaatatattaggtgtttgttggtttatgctaac |
9113068 |
T |
|
| Q |
288 |
tatcatagaggttcataatccaacg |
312 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
9113069 |
tatcatagaggttcataatccaacg |
9113093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 312
Target Start/End: Complemental strand, 7171595 - 7171282
Alignment:
| Q |
7 |
tgaagcttctgggcctaattttacggggattgtgtatgagtggtaatcaaaaatgtagtgatgaccttgaatcatgctatct---------tatttttaa |
97 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
7171595 |
tgaagcttctggacctaattttatggggattgtgtatgagtggtagccaaaaatgtagtgatgaacttgaatcatgctgtctcatttttattatttttaa |
7171496 |
T |
|
| Q |
98 |
ttcagtcaaaataatcaattgtccaaaattcttgtccatattatcattggttgctgcagaattgagttaaaggttgatgcaaatctcggttgtttgcgag |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| |
|
|
| T |
7171495 |
ttcagtcaaaataatcaattgtccaaaattcttgtccatattgtcattggttgctgcagaattgggttaaa--ttgatgcaaatctgagttgtttgcgag |
7171398 |
T |
|
| Q |
198 |
gaagaaggctccataccaagaataagaggagaggacagggaaaaaggaatgaaat-nnnnnnntattaggtgtttgtcggtttatgttaattatcataga |
296 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
7171397 |
gaagaaggctccatatcaagaataagaggagaggacagggaaaaaggaatgaaataaaaaaaatattaggtgtttgttggtttatgttaactatcataga |
7171298 |
T |
|
| Q |
297 |
ggttcataatccaacg |
312 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
7171297 |
ggttcaaaatccaacg |
7171282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 88 - 312
Target Start/End: Complemental strand, 32242777 - 32242553
Alignment:
| Q |
88 |
ttatttttaattcagtcaaaataatcaattgtccaaaattcttgtccatattatcattggttgctgcagaattgagttaaaggttgatgcaaatctcggt |
187 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| ||||||| | ||||| ||||||||||| |||||||||| || |
|
|
| T |
32242777 |
ttatttttaattcaatcaaaataatcaactgtccaaaattcttgtccatattatgatttgttgctgtataattgggttaaaggttgctgcaaatctcagt |
32242678 |
T |
|
| Q |
188 |
tgtttgcgaggaagaaggctccataccaagaataagaggagaggacagggaaaaaggaatgaaatnnnnnnntattaggtgtttgtcggtttatgttaat |
287 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| ||||||||||| |||||||||||| |||| |||||||||||||| |||||||| ||| |
|
|
| T |
32242677 |
tgtttgtgaggaagaaggctccgtaccaagaatgagaggagaggagggggaaaaaggaagaaaataaaaatatattaggtgtttgttggtttatgctaac |
32242578 |
T |
|
| Q |
288 |
tatcatagaggttcataatccaacg |
312 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
32242577 |
tatcatagaggttcataatccaacg |
32242553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 88 - 312
Target Start/End: Original strand, 33477350 - 33477573
Alignment:
| Q |
88 |
ttatttttaattcagtcaaaataatcaattgtccaaaattcttgtccatattatcattggttgctgcagaattgagttaaaggttgatgcaaatctcggt |
187 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||| | ||| ||||||| ||||||| ||||||||||| |||||||||| || |
|
|
| T |
33477350 |
ttatttttaattcagtcaaaataatcaactgtctaaaattcttgtccatattgtgatttgttgctgtagaattgggttaaaggttgctgcaaatctcagt |
33477449 |
T |
|
| Q |
188 |
tgtttgcgaggaagaaggctccataccaagaataagaggagaggacagggaaaaaggaatgaaatnnnnnnntattaggtgtttgtcggtttatgttaat |
287 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| ||||||||||| |||||||||||| |||| ||||| ||||||| ||||||| ||| |
|
|
| T |
33477450 |
tgtttgtgaggaagaaggctccgtaccaagaatgagaggagagga-ggggaaaaaggaagaaaattaaaatatattacatgtttgttagtttatgctaac |
33477548 |
T |
|
| Q |
288 |
tatcatagaggttcataatccaacg |
312 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
33477549 |
tatcatagaggttcataatctaacg |
33477573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 37460322 - 37460468
Alignment:
| Q |
88 |
ttatttttaattcagtcaaaataatcaattgtccaaaattcttgtccatattatca----ttggttgctgcagaattgagtt-aaaggttgatgcaaatc |
182 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||| | | ||||||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
37460322 |
ttatttttaattcaatcaaaataatcaactgtccaaaattcttgtccatattgtaacaatatggttgctgcagaattgggttaaaaggttgctgcaaatc |
37460421 |
T |
|
| Q |
183 |
tcggttgtttgcgaggaagaaggctccataccaagaataagaggaga |
229 |
Q |
| |
|
|| || ||| |||||||||| ||| ||||||||||||||||||| |
|
|
| T |
37460422 |
tcatctgattgtgaggaagaagactctgtaccaagaataagaggaga |
37460468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 88 - 312
Target Start/End: Original strand, 40273324 - 40273557
Alignment:
| Q |
88 |
ttatttttaattcagtcaaaataatcaattgtccaaaattcttgtccatattatcattggttgctgcagaattgagttaaaggttgatgcaaatctcggt |
187 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||| ||||||| ||||||||||| ||| |||||| || |
|
|
| T |
40273324 |
ttatttttaattcagtcaaaataatcaactgtccaaaattcttgtccatattgtgatttgttgctgtagaattgggttaaaggttgctgc-aatctcagt |
40273422 |
T |
|
| Q |
188 |
tgtttgcgaggaagaaggctccataccaagaataagaggagaggaca----------gggaaaaaggaatgaaatnnnnnnntattaggtgtttgtcggt |
277 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||| ||||||||||| | |||||||||||| |||| |||||||||||||| ||| |
|
|
| T |
40273423 |
tgtttgtgaggaagaaggctccgtaccaagaatgagaggagaggagaggagaggagggggaaaaaggaagaaaataaaaatatattaggtgtttgttggt |
40273522 |
T |
|
| Q |
278 |
ttatgttaattatcatagaggttcataatccaacg |
312 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40273523 |
ttatgttaactatcatagaggttcataatccaacg |
40273557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University