View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3459_high_8 (Length: 265)
Name: NF3459_high_8
Description: NF3459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3459_high_8 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 4666316 - 4666136
Alignment:
| Q |
25 |
taaataataattatgttagtattattggcagaaaaatccgtcaataatgttaataaccaatctgcattgaattagtggcggattttttcccttaataacg |
124 |
Q |
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| T |
4666316 |
taaataataattatgttagtattattggcagaaaaatccgtcaataatgtcaataaccaatctgcattgaattagtggcggatttttttcctcaataaca |
4666217 |
T |
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| Q |
125 |
gtaatgtagggccagtgaagaagacattgtattactggccgatttaaatccgtcaataatgttctaatatccgccaataccctttcatttccgccagtaa |
224 |
Q |
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| T |
4666216 |
gtaatgt-------------------ttgtattactggccgatttaaatccgtcaataatgttctaatatccgccaataccctttcatttccgcaagtaa |
4666136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 4666109 - 4666073
Alignment:
| Q |
221 |
gtaacaaaagaagataaattcatctcatgttcatctc |
257 |
Q |
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| T |
4666109 |
gtaacaaaagaagataaattcatctcatgttcgtctc |
4666073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 284908 - 284960
Alignment:
| Q |
56 |
aaaaatccgtcaataatgttaataaccaatctgcattgaattagtggcggatt |
108 |
Q |
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| T |
284908 |
aaaaatccgtcaataatgttaatgacaagtctggattgaattagtggcagatt |
284960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 291262 - 291314
Alignment:
| Q |
56 |
aaaaatccgtcaataatgttaataaccaatctgcattgaattagtggcggatt |
108 |
Q |
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| T |
291262 |
aaaaatccgtcaataatgttaatgacaagtctggattgaattagtggcagatt |
291314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 18196138 - 18196086
Alignment:
| Q |
56 |
aaaaatccgtcaataatgttaataaccaatctgcattgaattagtggcggatt |
108 |
Q |
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| T |
18196138 |
aaaaatccgtcaataatgttaatgacaagtctggattgaattagtggcagatt |
18196086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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