View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3459_low_6 (Length: 285)
Name: NF3459_low_6
Description: NF3459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3459_low_6 |
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| [»] chr4 (7 HSPs) |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 11468826 - 11468549
Alignment:
| Q |
8 |
gacatcatcaaagcttaatctataaaacaaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatg |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11468826 |
gacatcaccaaagcttaatctataaaacaaatggatttcaagagcaatggcagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatg |
11468727 |
T |
|
| Q |
108 |
tatacagctttataagttccatggcactcaaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaatt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11468726 |
tatacagctttataagttccatggcactcaaatctgctgtggaactaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaatt |
11468627 |
T |
|
| Q |
208 |
agcctcatctttgaaacttcacccttctaaagttagtgtcctatataggttcttgcgcttgctaacacacgatggttt |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11468626 |
agcctcatctttgaaacttcacccttctaaagttagtgtcctatataggttcttgcgcttgctaacacacgatggttt |
11468549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 11522635 - 11522912
Alignment:
| Q |
8 |
gacatcatcaaagcttaatctataaaacaaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatg |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11522635 |
gacatcaccaaagcttaatctataaaacaaatggatttcaagagcaatggcagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatg |
11522734 |
T |
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| Q |
108 |
tatacagctttataagttccatggcactcaaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaatt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11522735 |
tatacagctttataagttccatggcactcaaatctgctgtggaactaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaatt |
11522834 |
T |
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| Q |
208 |
agcctcatctttgaaacttcacccttctaaagttagtgtcctatataggttcttgcgcttgctaacacacgatggttt |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11522835 |
agcctcatctttgaaacttcacccttctaaagttagtgtcctatataggttcttgcgcttgctaacacacgatggttt |
11522912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 36 - 285
Target Start/End: Complemental strand, 11445826 - 11445577
Alignment:
| Q |
36 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcact |
135 |
Q |
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||||||||| || |||||||| |||||||||| |||||| |||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||||| |
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| T |
11445826 |
aaatggattccagtagcaatggcagtgaagaaagtcagctatatcatgctcaaatccatctgtacaaacatatatacagctttataaattccatggcact |
11445727 |
T |
|
| Q |
136 |
caaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaacttcacccttct |
235 |
Q |
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||||||||||||||| ||||| |||| |||||||||||||| |||||||| || |||||| || |||||||||| |||||||||||||| || ||||| |
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| T |
11445726 |
caaatctgctgtggaactaggcatagctgatgcaatccacaaccatggaaaaccaatgactcttactgaattagcttcatctttgaaactccatccttcg |
11445627 |
T |
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| Q |
236 |
aaagttagtgtcctatataggttcttgcgcttgctaacacacgatggttt |
285 |
Q |
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|||||||||||||| ||| | |||||||| ||||||||||| ||||||| |
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| T |
11445626 |
aaagttagtgtcctgtatcgtctcttgcgcctgctaacacacaatggttt |
11445577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 36 - 285
Target Start/End: Original strand, 11507033 - 11507282
Alignment:
| Q |
36 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcact |
135 |
Q |
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|||||||||||| |||||||| |||||||||| ||| |||||||| |||||||||||| | ||||||||| ||||| ||||||||| |||||||||||| |
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| T |
11507033 |
aaatggatttcagtagcaatggcagtgaagaaaatcaactgtatcacgctcaaatccatctgtacaaacatatatacggctttataaattccatggcact |
11507132 |
T |
|
| Q |
136 |
caaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaacttcacccttct |
235 |
Q |
| |
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|||||| || ||||| ||||| |||| |||||||||||| || |||||||| || |||||| || |||||||||| |||||||||||||| ||||||||| |
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| T |
11507133 |
caaatcagccgtggaactaggcatagcagatgcaatccaaaaccatggaaaaccaatgactcttactgaattagcttcatctttgaaactccacccttct |
11507232 |
T |
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| Q |
236 |
aaagttagtgtcctatataggttcttgcgcttgctaacacacgatggttt |
285 |
Q |
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|||||||||||||| ||| | |||||||||||||||||||| ||||||| |
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| T |
11507233 |
aaagttagtgtcctttatcgtctcttgcgcttgctaacacacaatggttt |
11507282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 36 - 285
Target Start/End: Original strand, 11547264 - 11547513
Alignment:
| Q |
36 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcact |
135 |
Q |
| |
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||||||||| || |||||||| |||||||||| |||| | |||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||||| |
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| T |
11547264 |
aaatggattccagtagcaatggcagtgaagaaagtcagttttatcatgctcaaatccatctgtacaaacatatatacagctttataaattccatggcact |
11547363 |
T |
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| Q |
136 |
caaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaacttcacccttct |
235 |
Q |
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||||||||||||||| ||||| |||| |||||||||||||| |||||||| || |||||| || |||||||||| |||||||||||||| || ||||| |
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| T |
11547364 |
caaatctgctgtggaactaggcatagctgatgcaatccacaaccatggaaaaccaatgactcttactgaattagcttcatctttgaaactccatccttcg |
11547463 |
T |
|
| Q |
236 |
aaagttagtgtcctatataggttcttgcgcttgctaacacacgatggttt |
285 |
Q |
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|||||||||||||| ||| | |||||||| ||||||||||| ||||||| |
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| T |
11547464 |
aaagttagtgtcctgtatcgtctcttgcgcctgctaacacacaatggttt |
11547513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 61 - 242
Target Start/End: Original strand, 34775649 - 34775830
Alignment:
| Q |
61 |
tgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcactcaaatctgctgtggagctaggaata |
160 |
Q |
| |
|
|||||||| | | ||||||||||||||||||||||| |||||||||||||||| |||| | ||||||||||| |||||||| || |||| ||||| ||| |
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| T |
34775649 |
tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggctctcaaatcagccatggaactaggcata |
34775748 |
T |
|
| Q |
161 |
gtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaacttcacccttctaaagtta |
242 |
Q |
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| |||||||| ||||| |||||||| || |||||| || ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34775749 |
gctgatgcaattcacaaccatggaaaaccaatgactctttctgaactagcctcatctttgaaacttcacccttctaaagtta |
34775830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 61 - 242
Target Start/End: Original strand, 34783870 - 34784051
Alignment:
| Q |
61 |
tgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcactcaaatctgctgtggagctaggaata |
160 |
Q |
| |
|
|||||||| | | ||||||||||||||||||||||| |||||||||||||||| |||| | |||||||||||||||||||| || |||| ||||| ||| |
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| T |
34783870 |
tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggcactcaaatcagccatggaactaggcata |
34783969 |
T |
|
| Q |
161 |
gtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaacttcacccttctaaagtta |
242 |
Q |
| |
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| ||||||||||| || |||||||| || |||||| || ||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
34783970 |
gctgatgcaatccataaccatggaaaaccaatgactctttctgaattagcctcatctttaaaactccacccttctaaagtta |
34784051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 36 - 285
Target Start/End: Original strand, 1690 - 1939
Alignment:
| Q |
36 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcact |
135 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| ||| |||||||| |||||||||||| | ||||||||| ||||| ||||||||| |||||||||||| |
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| T |
1690 |
aaatggatttcagtagcaatggcagtgaagaaaatcaactgtatcacgctcaaatccatctgtacaaacatatatacggctttataaattccatggcact |
1789 |
T |
|
| Q |
136 |
caaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaacttcacccttct |
235 |
Q |
| |
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|||||| || ||||| ||||| |||| |||||||||||| || |||||||| || |||||| || |||||||||| |||||||||||||| ||||||||| |
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| T |
1790 |
caaatcagccgtggaactaggcatagcagatgcaatccaaaaccatggaaaaccaatgactcttactgaattagcttcatctttgaaactccacccttct |
1889 |
T |
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| Q |
236 |
aaagttagtgtcctatataggttcttgcgcttgctaacacacgatggttt |
285 |
Q |
| |
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|||||||||||||| ||| | |||||||||||||||||||| ||||||| |
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| T |
1890 |
aaagttagtgtcctttatcgtctcttgcgcttgctaacacacaatggttt |
1939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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