View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3459_low_7 (Length: 276)
Name: NF3459_low_7
Description: NF3459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3459_low_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 52 - 276
Target Start/End: Original strand, 5294778 - 5295002
Alignment:
| Q |
52 |
ttattagtactaaaccagaattagatagttttgctgtgattaaatgttcatcaaatccaaagcaggattttagagattcaatgattgagatgattgaaga |
151 |
Q |
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| T |
5294778 |
ttattagtactaaaccagaattagatagttttgctgtgattaaatgttcatcaaatccaaagcaggattttagagattcaatgattgagatgattgaaga |
5294877 |
T |
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| Q |
152 |
gaaacagattagtaaggcagaagaaatggaagagttgttggcatgttatttgactttgaatgctgatgagtatcatgatctcataatcaaagtatttagg |
251 |
Q |
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| T |
5294878 |
gaaacagattagtaaggcagaagaaatggaagagttgttggcatgttatttgactttgaatgctgatgagtatcatgatctcataatcaaagtatttagg |
5294977 |
T |
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| Q |
252 |
caggtatggtttgatataagtcaat |
276 |
Q |
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| T |
5294978 |
caggtatggtttgatataagtcaat |
5295002 |
T |
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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 72 - 262
Target Start/End: Original strand, 36170880 - 36171070
Alignment:
| Q |
72 |
ttagatagttttgctgtgattaaatgttcatcaaatccaaagcaggattttagagattcaatgattgagatgattgaagagaaacagattagtaaggcag |
171 |
Q |
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| T |
36170880 |
ttagatagttttgctgttgtcaagtgttctttggatccacaacaagattttagagattcaatgattgagatgatcaaagagaaacatatcagtcagccag |
36170979 |
T |
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| Q |
172 |
aagaaatggaagagttgttggcatgttatttgactttgaatgctgatgagtatcatgatctcataatcaaagtatttaggcaggtatggtt |
262 |
Q |
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| T |
36170980 |
aagaaatggaagagttattagcgtgttatttgagtttgaattccaatgaattccatgatatcattatcaaagcgtttcgacaggtatggtt |
36171070 |
T |
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