View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3460_high_2 (Length: 316)
Name: NF3460_high_2
Description: NF3460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3460_high_2 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 94 - 316
Target Start/End: Original strand, 34891660 - 34891882
Alignment:
| Q |
94 |
tttaattcttcatggcaagtttcaatgttgcagttcagtggtaatggaatttgccttgattttaagagcgacttttctaattttaagttaacttctttaa |
193 |
Q |
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| T |
34891660 |
tttagttcttcatggcaagtttcaatgttgcagttcagtggtaatggaatttgccttgattttaagagcgacttttctaattttaagttaacttctttaa |
34891759 |
T |
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| Q |
194 |
atgacagtttgaaaaaaggcaattgattccactagaagtaatgtagctgccacagtactgaagggagtcaaacaaaacatgagtgatctctgctaaatgt |
293 |
Q |
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| T |
34891760 |
atgacagtttgaaaaaaggcaattgattccactagaagtaatgtagctgccacagtactgaagggagtcaagcaaaacatgagtgatctctgctaaatgt |
34891859 |
T |
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| Q |
294 |
attttagaagtcaaacaaagaaa |
316 |
Q |
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| T |
34891860 |
attttagaagtcaaacaaagaaa |
34891882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 34899975 - 34899905
Alignment:
| Q |
34 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttaattcttc |
104 |
Q |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttc |
34899905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 34891908 - 34891956
Alignment:
| Q |
268 |
aaacatgagtgatctctgctaaatgtattttagaagtcaaacaaagaaa |
316 |
Q |
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| T |
34891908 |
aaacatgagtgatatctgctaaacgtactttagaagtcaaacaaagaaa |
34891956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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