View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3461_high_1 (Length: 797)
Name: NF3461_high_1
Description: NF3461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3461_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 589; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 39 - 763
Target Start/End: Complemental strand, 25900090 - 25899353
Alignment:
| Q |
39 |
catttttataatattaaattaaaaaatcatctatgtctctcacttgcacaacttattgatggtatttggtgcattatcgttgattctaacggctttgaga |
138 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25900090 |
catttttacaatattaaattaaaaaatcatctatgtctctcacttgcacaacttattgatggtatttggtgcattatcgttgattctaacggctttgaga |
25899991 |
T |
|
| Q |
139 |
acagaaactgttcttaaaataagaatcagaaaggtttatggttaaaaaatcattatcaaatacaa-agcaatgt---acagagaaatttattgaatacat |
234 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| |
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| T |
25899990 |
acagaaactgttcttaaaataagaatcagaaaggtttatggttaaaaaatcattatcaaatacaagagcaatgtctcagagagaaatttattgaatacat |
25899891 |
T |
|
| Q |
235 |
tttgcaggtatttgctcgaatgactccatatgatatgggaaaagcctcttgtgtgagttgaaaatggcggtatacaattcgtaaccctgtattttggcgc |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25899890 |
tttgcaggtatttgctcgaatgactccatatgatatgggaaaagcctcttgtgtgagttgaaaatggcggtatacaattcgtaaccctgtactttggcgc |
25899791 |
T |
|
| Q |
335 |
aatgcatgcttgaagggttggcaggtaatgtcattggaggttttgaatatggatcttctactgcttataagtctaatttctgactacggagcctttttat |
434 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25899790 |
aatgcatgcttgaagggttggcaggtaatgtcattggaggttttgaatatggatcttctactgcttataagtctaatttctgactacggagccttcttat |
25899691 |
T |
|
| Q |
435 |
gaagctctctggagcggttgaaaactataagatacttcaatcaaaatacgacggctcatggcggaaaatgtggctcttatggccaaggttgcgatttgac |
534 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25899690 |
gaagctctctgaagcggttgaaaactataagatacttcaatcaaaatacgacggctcatggcggaaaatgtggctcttacggccaaggttgcgatttgat |
25899591 |
T |
|
| Q |
535 |
ggtaagcacagctatctcttatttcatagccttatttcctgctcttcatatt----gattagtgacctgtgatggttaagtttttttatcgccatgg--- |
627 |
Q |
| |
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|||||||||| |||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25899590 |
ggtaagcacaactatctcttattgcatagccttatttcctgatcttcatattgattgattagtgacctgtgatggttaagtttttttatcgccatggttt |
25899491 |
T |
|
| Q |
628 |
--gnnnnnnnnngcatactaatttccctagattgtgtgattatgaaaggttaaacttgaaatgagaat-ggcaaggtcctgatacattgatttgcttcaa |
724 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25899490 |
ttttttttttttgcatactaatttccctagattgtgtgattatgaaaggttaaacttgaaatgagaatgggcaaggtcctgatacattgatttgcttcaa |
25899391 |
T |
|
| Q |
725 |
tccttttgtcgatccttaaggacatgatgatatctattg |
763 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||| |
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| T |
25899390 |
tccttctgtcgat-cttaaggacatgatgatatctattg |
25899353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 638 - 698
Target Start/End: Complemental strand, 37616781 - 37616721
Alignment:
| Q |
638 |
gcatactaatttccctagattgtgtgattatgaaaggttaaacttgaaatgagaatggcaa |
698 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
37616781 |
gcatactattttccctagattgtgtgattatggaaggttaaacttgaaatgagaatggcaa |
37616721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 224 - 616
Target Start/End: Original strand, 40068361 - 40068753
Alignment:
| Q |
224 |
attgaatacattttgcaggtatttgctcgaatgactccatatgatatgggaaaagcctcttgtgtgagttgaaaatggcggtatacaattcgtaaccctg |
323 |
Q |
| |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| || || || || ||||||||||||| ||||| |||||||||| |
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| T |
40068361 |
attgaaaacattttgcaggtctttgctcgaatgactccatatgatatgggaaaagcatcgtgcgtatgtcgaaaatggcggtacacaatccgtaaccctg |
40068460 |
T |
|
| Q |
324 |
tattttggcgcaatgcatgcttgaagggttggcaggtaatgtcattggaggttttgaatatggatcttctactgcttataagtctaatttctgactacgg |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| || || |
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| T |
40068461 |
cattttggcgcaatgcatgcttgaagggttggcaggtaatgtcattggaggtttagaatatggatcttttactgcttataagtctaatttctgattatgg |
40068560 |
T |
|
| Q |
424 |
agcctttttatgaagctctctggagcggttgaaaactataagatacttcaatcaaaatacgacggctcatggcggaaaatgtggctcttatggccaaggt |
523 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
40068561 |
agcctttttatgaagctctctggagcggttgaaaactataaaatacttcaatcaaaatacgatggctcatggcggaaaatgtggctcttacggccaaggt |
40068660 |
T |
|
| Q |
524 |
tgcgatttgacggtaagcacagctatctcttatttcatagccttatttcctgctcttcatattgattagtgacctgtgatggttaagtttttt |
616 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |
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|
| T |
40068661 |
tgcgatttgatggtaagcacagctatctcttatttcataaccttatttcctgctcctcatattgattggtgaccggtgatggttaagtttttt |
40068753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 638 - 769
Target Start/End: Original strand, 29200018 - 29200148
Alignment:
| Q |
638 |
gcatactaatttccctagattgtgtgattatgaaaggttaaacttgaaatgagaatggcaaggtcctgatacattgatttgcttcaatccttttgtcgat |
737 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||||| |
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| T |
29200018 |
gcatactaatttccctagattgtgtgattatgaaaggttaaacctgaaatgagaatgacaaggtcctgatacattgattttcttcaatgcttctgtcgat |
29200117 |
T |
|
| Q |
738 |
ccttaaggacatgatgatatctattggtatgt |
769 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |
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|
| T |
29200118 |
-cttaaggacatgatgttatctattggtatgt |
29200148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 638 - 698
Target Start/End: Original strand, 19768506 - 19768566
Alignment:
| Q |
638 |
gcatactaatttccctagattgtgtgattatgaaaggttaaacttgaaatgagaatggcaa |
698 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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|
| T |
19768506 |
gcatactattttccctagattgtttgattatggaaggttaaacttgaaatgagaatggcaa |
19768566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 40068163 - 40068242
Alignment:
| Q |
90 |
cttattgatggtatttggtgcattatcgttgattctaacggctttgagaacagaaactgttcttaaaataagaatcagaa |
169 |
Q |
| |
|
|||||||| ||||||||||| |||| |||| ||| ||| ||||||||||||||||||||||| || ||| ||| ||||| |
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|
| T |
40068163 |
cttattgactgtatttggtgctttattgttggttccaacagctttgagaacagaaactgttctcaacataggaaccagaa |
40068242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 8e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 214 - 504
Target Start/End: Original strand, 41099456 - 41099749
Alignment:
| Q |
214 |
agagaaatttattgaatacattttgcaggtatttgctcgaatgactccatatgatatgggaaaagcctcttgtgtgagttgaaaatggcggtatacaatt |
313 |
Q |
| |
|
||||| |||||||||||||| |||||| ||||||||| ||||||||||||||||| || |||||||||||||||| | | ||||||| |||||| |||| |
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|
| T |
41099456 |
agagagatttattgaatacactttgcaagtatttgctagaatgactccatatgatgaggaaaaagcctcttgtgtgtg-tcaaaatggtggtataaaatt |
41099554 |
T |
|
| Q |
314 |
cgtaaccctgtattttggcgcaatgcatgcttgaagggttggcaggtaatgtca--ttggaggttttgaatatggatcttctactgcttataagtc--ta |
409 |
Q |
| |
|
| ||| |||||||||| | | ||||||||||||||||||||||| || | |||| |||| |||||||| || || ||| ||||||||||||||| || |
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|
| T |
41099555 |
cataagcctgtattttcgtggaatgcatgcttgaagggttggcaagtgaggtcaatatggacgttttgaaaatagaacttttactgcttataagtctata |
41099654 |
T |
|
| Q |
410 |
atttctgactacggagcctttttatgaagctctctggagcggttgaaaactataagatacttcaatcaaaatacgacggctcatggcggaaaatg |
504 |
Q |
| |
|
|| ||| | || |||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||||| || |||| |||| ||||||| |
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|
| T |
41099655 |
atatcttattatggagccttttcatgaagcactctagagtggttgaaaactataagatacttcaatcaaaatatgatggctagtggcagaaaatg |
41099749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 672 - 712
Target Start/End: Complemental strand, 8028252 - 8028212
Alignment:
| Q |
672 |
aggttaaacttgaaatgagaatggcaaggtcctgatacatt |
712 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
8028252 |
aggttaaacctgaaaggagaatggcaaggtcctgatacatt |
8028212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 642 - 721
Target Start/End: Original strand, 32663200 - 32663279
Alignment:
| Q |
642 |
actaatttccctagattgtgtgattatgaaaggttaaacttgaaatgagaatggcaaggtcctgatacattgatttgctt |
721 |
Q |
| |
|
|||| ||||||| ||||||||||| | | |||||||| | |||| ||||||||||| | |||||||||||| ||||||| |
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| T |
32663200 |
actattttccctggattgtgtgataaaggaaggttaagcctgaattgagaatggcaggttcctgatacattagtttgctt |
32663279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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