View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3461_high_11 (Length: 288)
Name: NF3461_high_11
Description: NF3461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3461_high_11 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 12 - 272
Target Start/End: Complemental strand, 143609 - 143349
Alignment:
| Q |
12 |
agagacttcacaagatctgtatatagaatgcgtccgcaatcaccaataatgacaacaaaatatgagacactcgtaaagattatccacaaaagtctttgag |
111 |
Q |
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| T |
143609 |
agagacttcacaagatctgtatatagaatgcgtccgcaatcaccaataatgaccacaaaatatgagacactcgtaaagattatccacaacagtctttgag |
143510 |
T |
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| Q |
112 |
tccaactcaaagttcatttccgacaaatgtaaatctctcacccactttaaagcatataagattctcagtgctttggtctgtgtcaacctcaagcacaggg |
211 |
Q |
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| T |
143509 |
tccaactcaaagttcatttccgacaaatgtaaatctctcacccactttaaagcatataagattctcagtgctttggtctgtgtcaacctcaagcacaggg |
143410 |
T |
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| Q |
212 |
gaaatccacttagttttggctagaataaaactcccccgaacatcttagatatgctaattcc |
272 |
Q |
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| T |
143409 |
gaaatccacttagttttggctagaacaaaactcccccgaacatcttagatatgctaattcc |
143349 |
T |
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