View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3461_high_12 (Length: 268)
Name: NF3461_high_12
Description: NF3461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3461_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 39088340 - 39088101
Alignment:
| Q |
19 |
ggtcccacatttgaaactccatgaagagcctctgaccaccactcatagcctttgatcccaacccttggaaccgacgcagcattgttcaccaacatgctaa |
118 |
Q |
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| T |
39088340 |
ggtcccacatttgaaactccatgaagagcctctgaccaccactcatagcctttgatcccaacccttggaaccgcggcagcattgttcaccaacatgctaa |
39088241 |
T |
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| Q |
119 |
ccttttcttgcaatgtcaatcttccaatgaggtcattcacccttgttggtataggcagtgatgccttgcaaaatggaaagttatttgtggaggtgttttt |
218 |
Q |
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| T |
39088240 |
ccttttcttgcaatgtcaatcttccaatgaggtcattcacccttgttggtataggcagtgatgccttgcaaaatggaaagttatttgtggaggtgttttt |
39088141 |
T |
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| Q |
219 |
tgggtcacatgcaaaagggtcacgtgcttcactactcatt |
258 |
Q |
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| T |
39088140 |
tgggtcacatgcaaaagggtcacgtgcttcactactcatt |
39088101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 158
Target Start/End: Original strand, 44721013 - 44721149
Alignment:
| Q |
22 |
cccacatttgaaactccatgaagagcctctgaccaccactcatagcctttgatcccaacccttggaaccgacgcagcattgttcaccaacatgctaacct |
121 |
Q |
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|||||||||||||| |||||||| ||||| |||||||||||||||| ||| || || || || ||||||| || |||||| ||||| |||| |||||| |
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| T |
44721013 |
cccacatttgaaacaccatgaagtgcctccgaccaccactcatagcttttcattccgactctaggaaccgccggagcattattcactaacagattaacct |
44721112 |
T |
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| Q |
122 |
tttcttgcaatgtcaatcttccaatgaggtcattcac |
158 |
Q |
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| T |
44721113 |
tctcttgcattgttaatcttccaatgagatccttcac |
44721149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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