View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3461_high_23 (Length: 236)
Name: NF3461_high_23
Description: NF3461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3461_high_23 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 37232558 - 37232338
Alignment:
| Q |
16 |
ctcttgctacatccagagcaattttcatccttctagacaaggtcatcagttctttctctgcaaacagtactcaaattaatgaaacatcattgaaaattga |
115 |
Q |
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| T |
37232558 |
ctcttgctacatccagagcaattttcatccttctagacaaggtcatcagttctttctctgcaaaaagtactcaaattaatgaaacatcattgaaaattga |
37232459 |
T |
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| Q |
116 |
tgcttttaatgtgttaataatatcacctgaattatgtagatgttggcttaagtttccattttccatgtattcatacacgagaaatagaaatccctcaaca |
215 |
Q |
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| T |
37232458 |
tacttttaatgtgttaataatatcacctgaattatgtagatgttggcttaagtttccattttccatgtattcatacacaagaaatagaaatccctcaaca |
37232359 |
T |
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| Q |
216 |
caatatccaatcaagtttacc |
236 |
Q |
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|||||||||||||||| |||| |
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| T |
37232358 |
caatatccaatcaagtgtacc |
37232338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 37217909 - 37217695
Alignment:
| Q |
24 |
acatccagagcaattttcatccttctagacaaggtcatcagttctttctctgcaaacagtactcaaattaatgaaacatcat--tgaaaattgatgcttt |
121 |
Q |
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| T |
37217909 |
acatccagggcaattttcatccttgtagacaacgtcatcggttctttctctgcaaacagtattcaaatcaattaaacatcatcatgaacaaatattca-- |
37217812 |
T |
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| Q |
122 |
taatgtgtt---aataatatcacctgaattatgtagatgttggcttaagtttccattttccatgtattcatacacgagaaatagaaatccctcaacacaa |
218 |
Q |
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| T |
37217811 |
-aatgtgtttataataatatcacctgaattatgtagatgttggcttaagtttccattttccatgtattcatacacaaggaatagaaatccctcgacacaa |
37217713 |
T |
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| Q |
219 |
tatccaatcaagtttacc |
236 |
Q |
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| T |
37217712 |
tatccaatcaagtgtacc |
37217695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 37223609 - 37223394
Alignment:
| Q |
24 |
acatccagagcaattttcatccttctagacaaggtcatcagttctttctctgcaaacagtactcaaattaatgaaacatcattgaaaattgatgctttta |
123 |
Q |
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| T |
37223609 |
acatccagggcaattttcatccttgtagacaacgttatcggttctttctctgcaaatggtattcaaatcaatgaaacatcatcaagaacaaatattcaaa |
37223510 |
T |
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| Q |
124 |
atgtgtt---aataatatcacctgaattatgtagatgttggcttaagtttccattttccatgtattcatacacgagaaatagaaatccctcaacacaata |
220 |
Q |
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| T |
37223509 |
atgtgtttataataatatcacctgaattatgtagatgttggtttaagtttccattttccatgtattcatacacaaggaatagaaatccctcaacacaata |
37223410 |
T |
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| Q |
221 |
tccaatcaagtttacc |
236 |
Q |
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| T |
37223409 |
tccaatcaagtgtacc |
37223394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 37385529 - 37385627
Alignment:
| Q |
138 |
tcacctgaattatgtagatgttggcttaagtttccattttccatgtattcatacacgagaaatagaaatccctcaacacaatatccaatcaagtttacc |
236 |
Q |
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| T |
37385529 |
tcacctgaatcatgtagattttggcttaagtttccattgtcgatgtattcataaacaaggaatagagatccctcaacacaatatccaatcaagtgtacc |
37385627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 37198334 - 37198255
Alignment:
| Q |
151 |
gtagatgttggcttaagtttccattttccatgtattcatacacgagaaatagaaatccctcaacacaatatccaatcaag |
230 |
Q |
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| T |
37198334 |
gtagatgttggcctaagtttccattatcaatgtattcatagacaaggaaaagggatccctcaacacagtatccgatcaag |
37198255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 37203348 - 37203257
Alignment:
| Q |
138 |
tcacctgaattatgtagatgttggcttaagtttccattttccatgtattcatacacgagaaatagaaatccctcaacacaatatccaatcaa |
229 |
Q |
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| T |
37203348 |
tcacctgaatcgtgaagattttgactcaagtttccattgtcaatgtattcatagacaaggaagagaaaaccttcaacacaatatccaatcaa |
37203257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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