View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3461_high_24 (Length: 224)

Name: NF3461_high_24
Description: NF3461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3461_high_24
NF3461_high_24
[»] chr1 (2 HSPs)
chr1 (59-224)||(39087687-39087851)
chr1 (3-43)||(39087622-39087661)


Alignment Details
Target: chr1 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 59 - 224
Target Start/End: Original strand, 39087687 - 39087851
Alignment:
Q  59 ccaataatatttgtttgctgtgatgtggatttttactgttttaacaaaattggaaaagaaaagatacttgcaaatnnnnnnngtgcatacggcaggtaaa 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| |    
T  39087687 ccaataatatttgtttgctgtgatgtggatttttactgttttaacaaaattggaaaagaaaagatacttgcaaat-aaaaaagtgcatacggcaggtaca 39087785  T
Q  159 ttccatcgatcggttgttaattttttgttaatcaacaacttaattttactgatatttcaacagcaa 224  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  39087786 ttccatcgatcggttgttaattttttgttaatcaccaacttaattttactgatatctcaacagcaa 39087851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 39087622 - 39087661
Alignment:
Q  3 gatgaagtgttggttcaaagtaaaaatctaatatgatagaa 43  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  39087622 gatgaagtgttg-ttcaaagtaaaaatctaatatgatagaa 39087661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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