View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3461_high_3 (Length: 643)
Name: NF3461_high_3
Description: NF3461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3461_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 337 - 628
Target Start/End: Complemental strand, 24396707 - 24396416
Alignment:
| Q |
337 |
tgcattccttggattcgaaaatatgtctacataacttgaagaaattatatatatgtagggtttagaaatacctcatctctaaaagcttcaagacggtgtt |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24396707 |
tgcattccttggattcgaaaatatgtctacataacttgaagaaattatatatatgtagggtttagaaatacctcatctctaaaagcttcaagacggtgtt |
24396608 |
T |
|
| Q |
437 |
tccctaaatcttgcatgagggccatgaagatatcattctctttttccactaggaaacgacgcaacccttttagttgtgattctctccaagatgcttcctt |
536 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24396607 |
tccctaaatcttgcatgagggccatgaagatatcattctctttttccactaggaaacgacgcaacccttttagttgtgattctctccaagatgcttcctt |
24396508 |
T |
|
| Q |
537 |
tgttataccactcctaaaatattctctcatattctttagatgatccatctccaaagttctcatgattttgatacctctttggagttaatatt |
628 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24396507 |
tgttataccactcctaaaatattctctcatattctttagatgatccatctccaaagttctcatgattttgatacctctttggagttaatatt |
24396416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 7398261 - 7398156
Alignment:
| Q |
26 |
ggggtagtactaagtcgtattactgggctataattttcttttttggctcatatcttggagagactcagctccattgaactttttgcacaccccaagatcc |
125 |
Q |
| |
|
||||||||||| ||| ||| ||||||||||||| ||| | ||| ||| |||| ||||| ||| |||||||||||||| || |||||||||||||| ||| |
|
|
| T |
7398261 |
ggggtagtacttagtagtactactgggctataaattt-tatttaggcccataccttggggaggctcagctccattgagctcgttgcacaccccaaggtcc |
7398163 |
T |
|
| Q |
126 |
gaccttg |
132 |
Q |
| |
|
||||||| |
|
|
| T |
7398162 |
gaccttg |
7398156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 26917977 - 26918086
Alignment:
| Q |
23 |
agtggggtagtactaagtcgtattactgggctataattttctttttt---ggctcatatcttggagagactcagctccattgaactttttgcacacccca |
119 |
Q |
| |
|
|||||||||||||| ||| ||| ||||| ||||||||||| |||||| | |||||| ||| |||| | |||||||||||| || ||||||||||| | |
|
|
| T |
26917977 |
agtggggtagtacttagtagtactactgagctataatttttttttttttagactcataccttagagatgcccagctccattgagctctttgcacacccta |
26918076 |
T |
|
| Q |
120 |
agatccgacc |
129 |
Q |
| |
|
| |||||||| |
|
|
| T |
26918077 |
aaatccgacc |
26918086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 30674701 - 30674760
Alignment:
| Q |
64 |
ttttttggctcatatcttggagagactcagctccattgaactttttgcacaccccaagat |
123 |
Q |
| |
|
||||| |||||||||||||||||||| ||| |||||||| ||||||| |||||||||||| |
|
|
| T |
30674701 |
tttttaggctcatatcttggagagacccagttccattgagctttttgtacaccccaagat |
30674760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 4036894 - 4036789
Alignment:
| Q |
23 |
agtggggtagtactaagtcgtattactgggctataattttcttttttggctcatatcttggagagactcagctccattgaactttttgcacaccccaaga |
122 |
Q |
| |
|
|||||| ||||||| ||| ||| ||||||||||||||||| |||| |||||||| |||| ||| | || ||||||||| | |||||||||||||||| |
|
|
| T |
4036894 |
agtgggatagtacttagtagtactactgggctataatttt-ttttgaggctcatacattggggaggcccaactccattgagcgttttgcacaccccaagg |
4036796 |
T |
|
| Q |
123 |
tccgacc |
129 |
Q |
| |
|
||||||| |
|
|
| T |
4036795 |
tccgacc |
4036789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 39135020 - 39135117
Alignment:
| Q |
25 |
tggggtagtactaagtcgtattactgggctataattttcttttt-tggctcatatcttggagagactcagctccattgaactttttgcacaccccaag |
121 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||||||||||| ||||| ||| |||| ||||| ||| | ||| |||||||| || ||||||||||||||| |
|
|
| T |
39135020 |
tggggtagtacttagtagtactactgggctataattttgtttttgaggcccataccttggggaggcccagttccattgagctctttgcacaccccaag |
39135117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 495 - 559
Target Start/End: Complemental strand, 41842481 - 41842417
Alignment:
| Q |
495 |
acgcaacccttttagttgtgattctctccaagatgcttcctttgttataccactcctaaaatatt |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||| |||||| | ||||||| | |||||| |
|
|
| T |
41842481 |
acgcaacccttttagttgtgattctctccatgatgtttcttttgtttttccactcccataatatt |
41842417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 13800853 - 13800912
Alignment:
| Q |
70 |
ggctcatatcttggagagactcagctccattgaactttttgcacaccccaagatccgacc |
129 |
Q |
| |
|
|||||||| |||||| |||| || ||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
13800853 |
ggctcataccttggaaagacccaactccattgagctttttgcacaccccaaggtccgacc |
13800912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 15639266 - 15639168
Alignment:
| Q |
23 |
agtggggtagtactaagtcgtattactgggctataattttcttttttggctcatatcttggagagactcagctccattgaactttttgcacaccccaag |
121 |
Q |
| |
|
|||||||||||||| ||| ||| |||||| |||||||||| ||||| ||| |||| ||||| ||| ||| |||||||| || ||||||||| |||| |
|
|
| T |
15639266 |
agtggggtagtacttagtagtactactggactataattttttttttaggcccataccttggggagctccagttccattgagctccttgcacacctcaag |
15639168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University