View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3461_high_6 (Length: 423)

Name: NF3461_high_6
Description: NF3461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3461_high_6
NF3461_high_6
[»] chr2 (24 HSPs)
chr2 (19-203)||(6411139-6411323)
chr2 (227-408)||(6411371-6411552)
chr2 (207-297)||(9049127-9049217)
chr2 (239-298)||(2796536-2796595)
chr2 (227-289)||(44838663-44838726)
chr2 (227-295)||(12848469-12848537)
chr2 (224-295)||(33068537-33068608)
chr2 (249-295)||(15806059-15806105)
chr2 (236-297)||(3666444-3666505)
chr2 (236-297)||(43678557-43678618)
chr2 (239-295)||(6083911-6083967)
chr2 (250-298)||(25626986-25627034)
chr2 (227-295)||(32066763-32066831)
chr2 (248-295)||(4654979-4655026)
chr2 (252-295)||(24389645-24389688)
chr2 (228-295)||(30523044-30523111)
chr2 (236-295)||(33455009-33455068)
chr2 (228-295)||(33634796-33634863)
chr2 (331-366)||(35443593-35443628)
chr2 (249-295)||(565711-565757)
chr2 (237-295)||(6334679-6334737)
chr2 (237-297)||(3191199-3191259)
chr2 (257-297)||(12762898-12762938)
chr2 (261-297)||(30869593-30869629)
[»] chr8 (16 HSPs)
chr8 (227-295)||(14016864-14016932)
chr8 (225-297)||(40628962-40629034)
chr8 (224-295)||(12002308-12002379)
chr8 (225-291)||(1876477-1876543)
chr8 (237-295)||(36907841-36907899)
chr8 (225-295)||(39594484-39594554)
chr8 (224-336)||(30486609-30486722)
chr8 (224-295)||(44024052-44024125)
chr8 (228-291)||(26014752-26014815)
chr8 (227-297)||(35501064-35501135)
chr8 (245-295)||(7627862-7627912)
chr8 (235-295)||(11533273-11533333)
chr8 (224-286)||(8350205-8350268)
chr8 (205-272)||(18842226-18842297)
chr8 (227-272)||(33865195-33865240)
chr8 (249-297)||(32271209-32271257)
[»] chr7 (11 HSPs)
chr7 (224-336)||(26871771-26871883)
chr7 (226-297)||(24610834-24610905)
chr7 (225-295)||(34299738-34299808)
chr7 (224-338)||(3267604-3267718)
chr7 (227-295)||(8237991-8238059)
chr7 (205-290)||(44452017-44452102)
chr7 (227-272)||(17255369-17255414)
chr7 (226-295)||(19620033-19620102)
chr7 (227-291)||(24299128-24299192)
chr7 (254-297)||(31498653-31498696)
chr7 (242-300)||(32699392-32699450)
[»] chr1 (22 HSPs)
chr1 (227-295)||(40286899-40286967)
chr1 (227-295)||(290632-290700)
chr1 (228-295)||(48884-48951)
chr1 (248-295)||(16113960-16114007)
chr1 (224-291)||(33791733-33791800)
chr1 (224-295)||(49478854-49478925)
chr1 (245-295)||(9931816-9931866)
chr1 (250-295)||(26700290-26700335)
chr1 (234-295)||(40053334-40053395)
chr1 (227-295)||(38172686-38172754)
chr1 (227-295)||(48947245-48947313)
chr1 (224-295)||(24034098-24034169)
chr1 (205-295)||(35259023-35259111)
chr1 (250-291)||(30548318-30548359)
chr1 (224-297)||(39973931-39974004)
chr1 (227-295)||(4040934-4041002)
chr1 (236-291)||(3047912-3047967)
chr1 (240-290)||(30596537-30596587)
chr1 (227-297)||(51904566-51904636)
chr1 (227-295)||(759223-759292)
chr1 (234-295)||(35543407-35543468)
chr1 (247-295)||(31043042-31043090)
[»] chr3 (9 HSPs)
chr3 (224-295)||(25317846-25317917)
chr3 (228-295)||(45757970-45758037)
chr3 (205-295)||(33072087-33072176)
chr3 (228-295)||(14146141-14146208)
chr3 (234-295)||(12140186-12140248)
chr3 (225-290)||(48174392-48174457)
chr3 (231-291)||(45557115-45557175)
chr3 (227-295)||(48551081-48551149)
chr3 (256-297)||(28691950-28691991)
[»] chr4 (16 HSPs)
chr4 (227-295)||(53261599-53261667)
chr4 (224-292)||(20022234-20022302)
chr4 (249-292)||(36876076-36876119)
chr4 (238-302)||(3179014-3179079)
chr4 (224-297)||(40252695-40252767)
chr4 (238-290)||(4392015-4392067)
chr4 (224-295)||(39767248-39767320)
chr4 (248-295)||(23136525-23136572)
chr4 (228-298)||(7996751-7996816)
chr4 (226-291)||(49795189-49795255)
chr4 (225-297)||(38681985-38682057)
chr4 (249-297)||(25042753-25042801)
chr4 (236-291)||(52650696-52650751)
chr4 (237-297)||(35153290-35153351)
chr4 (250-291)||(38354501-38354542)
chr4 (228-295)||(39724064-39724132)
[»] chr5 (13 HSPs)
chr5 (227-286)||(16637640-16637699)
chr5 (206-295)||(10228359-10228448)
chr5 (227-295)||(16636660-16636728)
chr5 (248-295)||(39177722-39177769)
chr5 (224-297)||(28639591-28639665)
chr5 (227-296)||(26432302-26432371)
chr5 (245-297)||(4695111-4695163)
chr5 (224-291)||(21259412-21259479)
chr5 (249-295)||(36609150-36609196)
chr5 (234-291)||(22601820-22601877)
chr5 (239-295)||(26686661-26686717)
chr5 (239-295)||(26956392-26956448)
chr5 (227-291)||(27794856-27794920)
[»] chr6 (3 HSPs)
chr6 (227-295)||(10364784-10364852)
chr6 (224-295)||(23344612-23344684)
chr6 (224-295)||(29716758-29716830)
[»] scaffold0010 (1 HSPs)
scaffold0010 (257-295)||(26742-26780)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 6411139 - 6411323
Alignment:
Q  19 gtttggatatgcaacatctaatgataattacaactcccatctatctcgcaatctctttaatttatgtgctcatgtgttaatcctttccctagagactaga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||    
T  6411139 gtttggatatgcaacatctaatgataattacaactcccatctatctcgcaatctctttaatttatatgcttatgtgttaatcctttcccaagagactaga 6411238  T
Q  119 attcaatttttcactcaagtgtctcaaaatgttggtatacaagtacgaccagcaataaacatgcacaatatgcttaaaatgtgtt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6411239 attcaatttttcactcaagtgtctcaaaatgttggtatacaagtacgaccagcaataaacgtgcacaatatgcttaaaatgtgtt 6411323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 227 - 408
Target Start/End: Original strand, 6411371 - 6411552
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaactttaaattttnnnnnnnntaattaatttatttaa 326  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||  ||||||||||||||||||| || |||        |||||| ||||||||     
T  6411371 gttaagaaccttaaataataactttttataaaagtatgtgtaatcagtacattggaaattgaaaacttttaaattttaaaagaataattactttatttag 6411470  T
Q  327 catgcttaaagaatactccaaggacacttgttaacaagactcatgagataatgatccgtataattcaatttttgctcaattc 408  Q
    |||| ||||| | | |||     ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6411471 catgtttaaaaagtgctctggaaacactcgttaacaagactcatgagataatgatccgtataattcaatttttgctcaattc 6411552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 9049127 - 9049217
Alignment:
Q  207 aaatgttaactagtgatctggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaactttaa 297  Q
    |||||||||||| || || | |||||||||||||||||||| ||||||||||| |||||||||| | || |||| |||||||||| |||||    
T  9049127 aaatgttaactaatgctcggattaagaaccttaaataataactttttataaaaatttgtgtaattaatgcattgaaaattgaaaaatttaa 9049217  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 2796536 - 2796595
Alignment:
Q  239 aaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaactttaaa 298  Q
    ||||| |||||||||||||||||||||||||||||| ||||| |||||||||| ||||||    
T  2796536 aaatagtaattttttataaaagtttgtgtaatcagtatattgaaaattgaaaattttaaa 2796595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 44838726 - 44838663
Alignment:
Q  227 gttaagaaccttaaataataa-ttttttataaaagtttgtgtaatcagtgtattggaaattgaa 289  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  44838726 gttaaggaccttaaataataacttttttataaaagtttgtgtaatcaatgtattgaaaattgaa 44838663  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 12848469 - 12848537
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||| ||||||||| | || ||||||| |||||||||||||| |||| | |||||||||||||||||    
T  12848469 gttaaggaccttaaatgacaactttttatgaaagtttgtgtaattagtgcaatggaaattgaaaacttt 12848537  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 295
Target Start/End: Original strand, 33068537 - 33068608
Alignment:
Q  224 ctggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||||||| ||| |||| | ||| ||||||| ||||||||| ||||||||| ||| |||||||||||||||    
T  33068537 ctggttaaggaccataaaaagtaactttttatgaaagtttgtataatcagtgcattagaaattgaaaacttt 33068608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 15806059 - 15806105
Alignment:
Q  249 tttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||||||||||||||||||||| || |||| ||||||||||||||    
T  15806059 tttttataaaagtttgtgtaatcaatgcattgaaaattgaaaacttt 15806105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 3666444 - 3666505
Alignment:
Q  236 cttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaactttaa 297  Q
    |||||||||||||||||||| ||||||| |||||||| |||||||  |||| |||| |||||    
T  3666444 cttaaataataattttttatgaaagtttatgtaatcaatgtattgagaattaaaaattttaa 3666505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 43678557 - 43678618
Alignment:
Q  236 cttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaactttaa 297  Q
    ||||||| |||||||||| |||||||||||||||| | |  |||| ||||||||||||||||    
T  43678557 cttaaatgataattttttttaaaagtttgtgtaattaatacattgaaaattgaaaactttaa 43678618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 6083911 - 6083967
Alignment:
Q  239 aaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||| |||| |||||||||||||||||||||||||   |||| ||||||||||||||    
T  6083911 aaatgataactttttataaaagtttgtgtaatcagcacattgaaaattgaaaacttt 6083967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 25627034 - 25626986
Alignment:
Q  250 ttttataaaagtttgtgtaatcagtgtattggaaattgaaaactttaaa 298  Q
    |||||| |||||| ||||||||| |||||||||||| ||||||||||||    
T  25627034 ttttatgaaagttggtgtaatcaatgtattggaaatcgaaaactttaaa 25626986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 32066831 - 32066763
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||| ||||||||| |||| ||||||| |||||||||||||| |||  ||| |||||| ||||||||    
T  32066831 gttaaggaccttaaattataactttttatgaaagtttgtgtaattagtacattagaaattaaaaacttt 32066763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 4654979 - 4655026
Alignment:
Q  248 ttttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||||| |||||||||||||||| ||| |||| ||||||||||||||    
T  4654979 ttttttacaaaagtttgtgtaatcggtgcattgaaaattgaaaacttt 4655026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 295
Target Start/End: Original strand, 24389645 - 24389688
Alignment:
Q  252 ttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||| ||||||||||||||||| | |||||||||||||||||||    
T  24389645 ttatgaaagtttgtgtaatcagcgcattggaaattgaaaacttt 24389688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 30523111 - 30523044
Alignment:
Q  228 ttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||| |||||| ||  ||| ||||||| |||||||||||||| |||  |||||||||||||||||||    
T  30523111 ttaagtaccttagatggtaactttttatgaaagtttgtgtaattagtacattggaaattgaaaacttt 30523044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 33455068 - 33455009
Alignment:
Q  236 cttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||||| ||| ||||||| |||  ||||||||||| ||||||| ||||||||||||||    
T  33455068 cttaaatagtaactttttatgaaaagttgtgtaatcaatgtattgtaaattgaaaacttt 33455009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 33634796 - 33634863
Alignment:
Q  228 ttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||| || ||||||| ||| |||||||||||  ||||| |||||||  |||||||||||||||||||    
T  33634796 ttaaggactttaaatagtaactttttataaaaagttgtgcaatcagtacattggaaattgaaaacttt 33634863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 366
Target Start/End: Original strand, 35443593 - 35443628
Alignment:
Q  331 cttaaagaatactccaaggacacttgttaacaagac 366  Q
    |||||||||||||||| |||||||||||||||||||    
T  35443593 cttaaagaatactccagggacacttgttaacaagac 35443628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 565711 - 565757
Alignment:
Q  249 tttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||||| |||||||||||||| |||| || ||||||||||||||||    
T  565711 tttttatgaaagtttgtgtaattagtgcataggaaattgaaaacttt 565757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 295
Target Start/End: Original strand, 6334679 - 6334737
Alignment:
Q  237 ttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||| |||| |||||| |||||||| | |||||| || |||||||||||||||||||    
T  6334679 ttaaatgataactttttacaaaagtttatataatcaatgcattggaaattgaaaacttt 6334737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 3191259 - 3191199
Alignment:
Q  237 ttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaactttaa 297  Q
    |||||| |||| ||||||||||||||||| |||||| || | || |||||||||| |||||    
T  3191259 ttaaatgataaatttttataaaagtttgtataatcaatgcaatgaaaattgaaaaatttaa 3191199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 12762898 - 12762938
Alignment:
Q  257 aaagtttgtgtaatcagtgtattggaaattgaaaactttaa 297  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  12762898 aaagtttgtgtaaacagtgcattggaaattgaaaattttaa 12762938  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 30869593 - 30869629
Alignment:
Q  261 tttgtgtaatcagtgtattggaaattgaaaactttaa 297  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  30869593 tttgtgttatcagtgtattagaaattgaaaactttaa 30869629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 14016864 - 14016932
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||| |||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  14016864 gttaaggaccttaaatagtaattttttataaaagtttgtgtgatcagtgcattggaaattgaaaacttt 14016932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 40628962 - 40629034
Alignment:
Q  225 tggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaactttaa 297  Q
    |||||||| |||||||||| |||| |||||||||||||||||||||||||| |||||||||| ||||||||||    
T  40628962 tggttaaggaccttaaatagtaatcttttataaaagtttgtgtaatcagtgaattggaaattaaaaactttaa 40629034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 224 - 295
Target Start/End: Complemental strand, 12002379 - 12002308
Alignment:
Q  224 ctggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||||||| | |||||||| ||| ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  12002379 ctggttaaggatcttaaatagtaactttttataaaaatttgtgtaatcagtgcattggaaattgaaaacttt 12002308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 1876477 - 1876543
Alignment:
Q  225 tggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaa 291  Q
    |||||||| || ||||||  ||||||||||| ||||||||||||||||||| |||||||||||||||    
T  1876477 tggttaaggactttaaatggtaattttttatgaaagtttgtgtaatcagtgcattggaaattgaaaa 1876543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 295
Target Start/End: Complemental strand, 36907899 - 36907841
Alignment:
Q  237 ttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||||| ||| |||||||||||||||||||||||| || |||||||||||||||||||    
T  36907899 ttaaatagtaactttttataaaagtttgtgtaatcattgcattggaaattgaaaacttt 36907841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 39594484 - 39594554
Alignment:
Q  225 tggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||||| | ||||||| |||| ||||||| ||||||||| ||||||||||| || ||||||||||||||    
T  39594484 tggttaaggatcttaaatgataactttttatgaaagtttgtataatcagtgtaatgaaaattgaaaacttt 39594554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 336
Target Start/End: Complemental strand, 30486722 - 30486609
Alignment:
Q  224 ctggttaagaaccttaaataataatttttt-ataaaagtttgtgtaatcagtgtattggaaattgaaaactttaaattttnnnnnnnntaattaatttat 322  Q
    ||||||||| || ||||||| ||||||||| |||||||||||||||||||||| |||  ||||| |||||||| || |||        |||||| |||||    
T  30486722 ctggttaaggactttaaatagtaatttttttataaaagtttgtgtaatcagtgcattataaattaaaaacttttaaattttaaaagaataattactttat 30486623  T
Q  323 ttaacatgcttaaa 336  Q
    ||||||| ||||||    
T  30486622 ttaacatacttaaa 30486609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 295
Target Start/End: Complemental strand, 44024125 - 44024052
Alignment:
Q  224 ctggttaagaaccttaaataataatttttt-ataaaagtttgtgtaatcagtgtattggaaa-ttgaaaacttt 295  Q
    ||||||||| |||| ||||||||||||||| ||| |||||||||||||||||| |||| ||| |||||||||||    
T  44024125 ctggttaaggacctaaaataataatttttttatagaagtttgtgtaatcagtgcattgaaaatttgaaaacttt 44024052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 26014752 - 26014815
Alignment:
Q  228 ttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaa 291  Q
    ||||| ||| |||||| ||| |||||||||| |||||||||||||||| ||||||| |||||||    
T  26014752 ttaaggaccataaatagtaactttttataaatgtttgtgtaatcagtgcattggaacttgaaaa 26014815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 35501064 - 35501135
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaat-cagtgtattggaaattgaaaactttaa 297  Q
    |||||| || ||||||| ||| ||||||||||||||||||||||  |||| |||||||||| ||||||||||    
T  35501064 gttaaggactttaaatattaaatttttataaaagtttgtgtaataaagtgcattggaaattaaaaactttaa 35501135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 7627862 - 7627912
Alignment:
Q  245 taattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||||||||| ||||||||||| ||||||||||| |||||| ||||||||    
T  7627862 taattttttatgaaagtttgtgtgatcagtgtattagaaattaaaaacttt 7627912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 11533333 - 11533273
Alignment:
Q  235 ccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||||||  ||||||||||| ||||||||||   |||||| |||||||||||||||||||    
T  11533333 ccttaaatggtaattttttatgaaagtttgtgccttcagtgcattggaaattgaaaacttt 11533273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 8350205 - 8350268
Alignment:
Q  224 ctggttaagaaccttaaataataattttttataaaagtttgtgtaat-cagtgtattggaaatt 286  Q
    |||||||||||| ||||||| ||  ||||||||||||||||||||||  | |||||||||||||    
T  8350205 ctggttaagaactttaaatagtatctttttataaaagtttgtgtaataaaatgtattggaaatt 8350268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 18842226 - 18842297
Alignment:
Q  205 ggaaatgttaactagtgatct----ggttaagaaccttaaataataattttttataaaagtttgtgtaatca 272  Q
    ||||||||||||||||| |||     |||||| ||||||||| | ||| |||||||||||||||||||||||    
T  18842226 ggaaatgttaactagtgctctcggaagttaaggaccttaaattacaatattttataaaagtttgtgtaatca 18842297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 33865195 - 33865240
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatca 272  Q
    |||||| ||| |||| ||||||||||||| ||||||||||||||||    
T  33865195 gttaaggaccataaaaaataattttttattaaagtttgtgtaatca 33865240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 32271257 - 32271209
Alignment:
Q  249 tttttataaaagtttgtgtaatcagtgtattggaaattgaaaactttaa 297  Q
    |||||||  ||||||||||||||| || ||| |||||||||||||||||    
T  32271257 tttttatggaagtttgtgtaatcaatgaattagaaattgaaaactttaa 32271209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 224 - 336
Target Start/End: Complemental strand, 26871883 - 26871771
Alignment:
Q  224 ctggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaactttaaattttnnnnnnnntaattaatttatt 323  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||| || || ||||| |||||||| || |||        |||||| ||||||    
T  26871883 ctggttaaggaccttaaatagtaattttttataaaagtttgtgtaatcagtataatgaaaattcaaaacttttaaattttaaaagaataattactttatt 26871784  T
Q  324 taacatgcttaaa 336  Q
    || ||||||||||    
T  26871783 tagcatgcttaaa 26871771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 24610834 - 24610905
Alignment:
Q  226 ggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaactttaa 297  Q
    ||||||| || |||||| ||||||||||||||||||||||||||| |||| ||| |||||| ||||||||||    
T  24610834 ggttaaggactttaaatgataattttttataaaagtttgtgtaattagtgaattagaaattcaaaactttaa 24610905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Original strand, 34299738 - 34299808
Alignment:
Q  225 tggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||||| |||||||||| ||| ||||||| |||||||||||||||||||  ||| ||||||||||||||    
T  34299738 tggttaaggaccttaaatagtaactttttatgaaagtttgtgtaatcagtgctttgtaaattgaaaacttt 34299808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 338
Target Start/End: Original strand, 3267604 - 3267718
Alignment:
Q  224 ctggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaactttaaattttnnnnnnnntaattaatttatt 323  Q
    ||||||||| |||| |||||  || |||||||||||||||||||||| |||| |||| |||| ||||||||| || |||        |||||| ||||||    
T  3267604 ctggttaaggacctaaaatagcaagtttttataaaagtttgtgtaatgagtgcattgaaaatggaaaacttttaaattttaaaagaataattactttatt 3267703  T
Q  324 taacatgcttaaaga 338  Q
    || ||||||||||||    
T  3267704 tagcatgcttaaaga 3267718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 8238059 - 8237991
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||| |||||||||  ||| ||||||| ||||||||||||||||||| |||| ||| ||||||||||    
T  8238059 gttaaggaccttaaatggtaactttttatgaaagtttgtgtaatcagtgcattgaaaaatgaaaacttt 8237991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 290
Target Start/End: Original strand, 44452017 - 44452102
Alignment:
Q  205 ggaaatgttaactagtgatctggttaagaaccttaaataataattttttataaaagtttgtgtaat-cagtgtattggaaattgaaa 290  Q
    ||||||||||||||||| ||  |||||  || ||||||| ||||||||||| ||||||||||||||  |||| ||||||||||||||    
T  44452017 ggaaatgttaactagtg-tcccgttaatgactttaaatagtaattttttatgaaagtttgtgtaataaagtgcattggaaattgaaa 44452102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 17255414 - 17255369
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatca 272  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||    
T  17255414 gttaaggaccttaaatagtaattttttataaaagtttgcgtaatca 17255369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 19620102 - 19620033
Alignment:
Q  226 ggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||||  ||||||||| ||| ||||||| |||  |||| ||||||||| |||||||||||||||||||    
T  19620102 ggttaagggccttaaatagtaactttttatgaaaagttgtataatcagtgcattggaaattgaaaacttt 19620033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 24299128 - 24299192
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaa 291  Q
    ||||||| ||||||||||||| ||||||| |||  |||| ||||||||| |||||||||| ||||    
T  24299128 gttaagagccttaaataataactttttatgaaaagttgtataatcagtgcattggaaattaaaaa 24299192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 297
Target Start/End: Original strand, 31498653 - 31498696
Alignment:
Q  254 ataaaagtttgtgtaatcagtgtattggaaattgaaaactttaa 297  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||||    
T  31498653 ataaaagtttgtgcaatcaatgtattgaaaattgaaaactttaa 31498696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 32699450 - 32699392
Alignment:
Q  242 taataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaactttaaatt 300  Q
    |||||| ||||||| |||||||||| |||||||| ||| ||||||||||| ||| ||||    
T  32699450 taataactttttatgaaagtttgtgcaatcagtgcatttgaaattgaaaattttgaatt 32699392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 40286967 - 40286899
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||||||| ||||||| ||| |||||||||||||||||||| |||||| |||||||||||||||||||    
T  40286967 gttaagaactttaaatagtaactttttataaaagtttgtgtactcagtgcattggaaattgaaaacttt 40286899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 290700 - 290632
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||||||| ||||||||||| |||| ||  |||||||||||||||||| |||| ||||||||||||||    
T  290700 gttaagaacgttaaataataacttttcattgaagtttgtgtaatcagtgcattgtaaattgaaaacttt 290632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 48884 - 48951
Alignment:
Q  228 ttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||||||||| ||| ||| ||||||| ||||||||||||||| ||| |||| ||||||||||||||    
T  48884 ttaagaaccttacatagtaaatttttatgaaagtttgtgtaatcggtgcattgaaaattgaaaacttt 48951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 16114007 - 16113960
Alignment:
Q  248 ttttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  16114007 ttttttatgaaagtttgtgtaatcagtgcattggaaattgaaaacttt 16113960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 33791733 - 33791800
Alignment:
Q  224 ctggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaa 291  Q
    ||||||||  || ||||||| ||| ||||||| ||||||||||||||| |||||||||||||||||||    
T  33791733 ctggttaaagactttaaatagtaactttttatgaaagtttgtgtaatcggtgtattggaaattgaaaa 33791800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 295
Target Start/End: Complemental strand, 49478925 - 49478854
Alignment:
Q  224 ctggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||||||| | |||||||  ||| |||| ||| |||||||||||||||||| |||||||||||||||||||    
T  49478925 ctggttaaggaacttaaatggtaacttttcatagaagtttgtgtaatcagtgcattggaaattgaaaacttt 49478854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 9931866 - 9931816
Alignment:
Q  245 taattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||||||||||||||||||||||| | ||||||| ||||||||||||||    
T  9931866 taattttttataaaagtttgtgtaattaatgtattgaaaattgaaaacttt 9931816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 26700335 - 26700290
Alignment:
Q  250 ttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||    
T  26700335 ttttataaaagtttgtgtaatgagtgtattggaaattaaaaacttt 26700290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 40053395 - 40053334
Alignment:
Q  234 accttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||||||| ||| ||||||| |||||||||||||| | ||||||| ||||||||||||||    
T  40053395 accttaaatagtaactttttatgaaagtttgtgtaataaatgtattgaaaattgaaaacttt 40053334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 38172754 - 38172686
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||| || |||||| |||| ||||||||||||||||||||||||||| |||  ||||| ||||||||    
T  38172754 gttaaggactttaaatgataactttttataaaagtttgtgtaatcagtgcattaaaaattaaaaacttt 38172686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 48947313 - 48947245
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||| || ||||||  ||| ||||||| ||| ||||||||||||||| |||||||||||||||||||    
T  48947313 gttaaggactttaaatggtaactttttatgaaaatttgtgtaatcagtgcattggaaattgaaaacttt 48947245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 295
Target Start/End: Complemental strand, 24034169 - 24034098
Alignment:
Q  224 ctggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||||| | || ||||||| |||  |||||||| ||||||||||||||||| ||| |||||||||||||||    
T  24034169 ctggttatggactttaaatagtaaacttttataagagtttgtgtaatcagtgcattagaaattgaaaacttt 24034098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 295
Target Start/End: Original strand, 35259023 - 35259111
Alignment:
Q  205 ggaaatgttaactagtgatctggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||||||||||||||| ||  |||||| || ||||||  ||| |||||| ||| || ||||||||||| | |||||||||||||||||||    
T  35259023 ggaaatgttaactagtgctc--gttaaggactttaaatggtaactttttacaaatgtgtgtgtaatcagcgcattggaaattgaaaacttt 35259111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 291
Target Start/End: Complemental strand, 30548359 - 30548318
Alignment:
Q  250 ttttataaaagtttgtgtaatcagtgtattggaaattgaaaa 291  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  30548359 ttttatgaaagttagtgtaatcagtgtattggaaattgaaaa 30548318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 39974004 - 39973931
Alignment:
Q  224 ctggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaactttaa 297  Q
    ||||||||  || |||||| |||| ||||||| ||||||||| |||||| || |||| ||||||||||||||||    
T  39974004 ctggttaaagactttaaatgataactttttatgaaagtttgtataatcaatgcattgaaaattgaaaactttaa 39973931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 4041002 - 4040934
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||| || |||||| |||| ||||| | |||||||||||||| ||| ||||| ||||||||||||||    
T  4041002 gttaaggactttaaatgataactttttgtgaaagtttgtgtaataagtatattgaaaattgaaaacttt 4040934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 3047967 - 3047912
Alignment:
Q  236 cttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaa 291  Q
    |||||||| ||||||||||| ||||||||| |||||| || ||||||||| |||||    
T  3047967 cttaaatagtaattttttatgaaagtttgtttaatcaatgcattggaaatcgaaaa 3047912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 30596537 - 30596587
Alignment:
Q  240 aataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaa 290  Q
    |||||||||||||||||||| | |||||||||| || ||| ||||||||||    
T  30596537 aataataattttttataaaaatatgtgtaatcaatgcatttgaaattgaaa 30596587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 51904566 - 51904636
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaactttaa 297  Q
    |||||| |||||||||   |||||||||| |||||||||||| |  | | |||||||||||||||||||||    
T  51904566 gttaaggaccttaaattgcaattttttatgaaagtttgtgtagttggggcattggaaattgaaaactttaa 51904636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 759223 - 759292
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaat-cagtgtattggaaattgaaaacttt 295  Q
    ||||||||| ||||||  |||| ||||||  |||||||||||||  |||||||||||||||| |||||||    
T  759223 gttaagaactttaaatggtaatcttttatgtaagtttgtgtaataaagtgtattggaaattggaaacttt 759292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 35543407 - 35543468
Alignment:
Q  234 accttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||||||  ||| ||| || ||||||||||||||| | | ||||||||||||||||||||    
T  35543407 accttaaatggtaactttgtacaaaagtttgtgtaattaatatattggaaattgaaaacttt 35543468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 31043090 - 31043042
Alignment:
Q  247 attttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||| |||| |||||||||||||||| || |||| ||||||||||||||    
T  31043090 atttcttatgaaagtttgtgtaatcaatgcattgaaaattgaaaacttt 31043042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 224 - 295
Target Start/End: Complemental strand, 25317917 - 25317846
Alignment:
Q  224 ctggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||||||| |||||||||| ||| |||||||||||||||||||||||  || |||||||||||||||||||    
T  25317917 ctggttaaggaccttaaatagtaaatttttataaaagtttgtgtaatcgatgcattggaaattgaaaacttt 25317846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 45758037 - 45757970
Alignment:
Q  228 ttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||| ||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||||||    
T  45758037 ttaaggaccttaaataatatttttttatgaaagtttgtgtaatcagtgcattgtaaattgaaaacttt 45757970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 205 - 295
Target Start/End: Original strand, 33072087 - 33072176
Alignment:
Q  205 ggaaatgttaactagtgatctggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||||||||||||||  || |||||| |||| ||||  ||||||||||||||| |||||||||| | || |||||||||||||||||||    
T  33072087 ggaaatgttaactagtgc-ctcgttaaggacctgaaatggtaattttttataaaaatttgtgtaattaatgcattggaaattgaaaacttt 33072176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 14146208 - 14146141
Alignment:
Q  228 ttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||| || ||||||  ||| |||||||| |||||||||||||||||| ||| |||||||||||||||    
T  14146208 ttaaggactttaaatggtaaatttttatagaagtttgtgtaatcagtgcattagaaattgaaaacttt 14146141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 12140248 - 12140186
Alignment:
Q  234 accttaaataataattttttataaaa-gtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||||||| ||| ||||||||||| |||||| ||||||||  |||||||||||||||||||    
T  12140248 accttaaatagtaactttttataaaaagtttgtataatcagtacattggaaattgaaaacttt 12140186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 48174392 - 48174457
Alignment:
Q  225 tggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaa 290  Q
    |||||||| |||| ||||| ||| | |||||||||||||||| ||||||||| ||| |||||||||    
T  48174392 tggttaaggacctcaaatagtaactctttataaaagtttgtgcaatcagtgtcttgaaaattgaaa 48174457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 45557175 - 45557115
Alignment:
Q  231 agaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaa 291  Q
    ||||||||||||||||| ||||||| ||||| ||| |||||| ||||||| ||||| ||||    
T  45557175 agaaccttaaataataaatttttatgaaagtgtgtataatcaatgtattgaaaattaaaaa 45557115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 48551149 - 48551081
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||| |||| ||||| ||| |||||||||||  |||||||||| ||| |||| ||||||||||||||    
T  48551149 gttaaggacctcaaatagtaactttttataaaaaattgtgtaatcggtgcattgaaaattgaaaacttt 48551081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 297
Target Start/End: Original strand, 28691950 - 28691991
Alignment:
Q  256 aaaagtttgtgtaatcagtgtattggaaattgaaaactttaa 297  Q
    ||||||||||||||| | |||||| |||||||||||||||||    
T  28691950 aaaagtttgtgtaattattgtattagaaattgaaaactttaa 28691991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 53261667 - 53261599
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||| || ||||||| ||| |||||||||||||||||||||||| || |||||||||||||||||||    
T  53261667 gttaaggactttaaatagtaactttttataaaagtttgtgtaatcactgcattggaaattgaaaacttt 53261599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 292
Target Start/End: Complemental strand, 20022302 - 20022234
Alignment:
Q  224 ctggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaac 292  Q
    ||||||||| |||||||||| ||||||||||| |||||||||  ||||| || ||||||||||||||||    
T  20022302 ctggttaaggaccttaaatagtaattttttatgaaagtttgtacaatcaatgcattggaaattgaaaac 20022234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 292
Target Start/End: Original strand, 36876076 - 36876119
Alignment:
Q  249 tttttataaaagtttgtgtaatcagtgtattggaaattgaaaac 292  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  36876076 tttttataaaagtttgtgtaatcaatgtattggaaattgaaaac 36876119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 3179014 - 3179079
Alignment:
Q  238 taaataataattttttataaaagtttgtgtaatca-gtgtattggaaattgaaaactttaaatttt 302  Q
    |||||| ||| ||||||| |||||||||||||| | ||||||||||||||||||||||||| ||||    
T  3179014 taaatagtaactttttatgaaagtttgtgtaataaagtgtattggaaattgaaaactttaactttt 3179079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 40252767 - 40252695
Alignment:
Q  224 ctggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaactttaa 297  Q
    ||||||||| || ||||||| ||| ||||||| |||||| ||||||||| ||||||| ||||||||||||||||    
T  40252767 ctggttaaggactttaaatagtaaatttttatgaaagtt-gtgtaatcaatgtattgaaaattgaaaactttaa 40252695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 4392067 - 4392015
Alignment:
Q  238 taaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaa 290  Q
    ||||| |||| ||||||||||| |||||||||||||||||||| |||||||||    
T  4392067 taaatgataaatttttataaaaatttgtgtaatcagtgtattgaaaattgaaa 4392015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 295
Target Start/End: Complemental strand, 39767320 - 39767248
Alignment:
Q  224 ctggttaagaaccttaaataataatttttt-ataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||||||| |||| ||||| ||||||||| ||||||||||||||||| | || |||||||||| ||||||||    
T  39767320 ctggttaaggacctcaaatagtaatttttttataaaagtttgtgtaattaatgcattggaaattaaaaacttt 39767248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 23136525 - 23136572
Alignment:
Q  248 ttttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||| |||||| |||||||||||||| |||||||||||||||||||    
T  23136525 ttttttgtaaaagattgtgtaatcagtgcattggaaattgaaaacttt 23136572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 7996816 - 7996751
Alignment:
Q  228 ttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaactttaaa 298  Q
    ||||| || ||||||||||||||||||| |||||||||||||||     |||||||||| |||||||||||    
T  7996816 ttaaggactttaaataataattttttatgaaagtttgtgtaatc-----attggaaattaaaaactttaaa 7996751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 49795255 - 49795189
Alignment:
Q  226 ggttaagaaccttaaataataatttttt-ataaaagtttgtgtaatcagtgtattggaaattgaaaa 291  Q
    ||||||| || ||||||| ||||||||| |||||||||||||||||| ||| |||| ||||||||||    
T  49795255 ggttaaggactttaaatagtaatttttttataaaagtttgtgtaatcggtgcattgaaaattgaaaa 49795189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 38681985 - 38682057
Alignment:
Q  225 tggttaagaaccttaaataataattttttataaaagtttgtgtaatca-gtgtattggaaattgaaaactttaa 297  Q
    |||||||| || |||||||| ||||||| ||||||| ||||||||| | |||||||| ||||||||||||||||    
T  38681985 tggttaaggactttaaataacaattttt-ataaaagcttgtgtaataaagtgtattgaaaattgaaaactttaa 38682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 25042753 - 25042801
Alignment:
Q  249 tttttataaaagtttgtgtaatcagtgtattggaaattgaaaactttaa 297  Q
    ||||||||||||||||||||||||||  ||| ||||||||||| |||||    
T  25042753 tttttataaaagtttgtgtaatcagtacattagaaattgaaaattttaa 25042801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 52650696 - 52650751
Alignment:
Q  236 cttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaa 291  Q
    |||||||| ||||||||||| |||  |||||||||||||| |||| ||||||||||    
T  52650696 cttaaatagtaattttttatgaaaaattgtgtaatcagtgaattgaaaattgaaaa 52650751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 35153351 - 35153290
Alignment:
Q  237 ttaaataataattttttataaaagtttgtgtaat-cagtgtattggaaattgaaaactttaa 297  Q
    ||||||| ||| |||||||||||||||||| |||  |||| |||| ||||||||||||||||    
T  35153351 ttaaatagtaactttttataaaagtttgtgcaataaagtgcattgaaaattgaaaactttaa 35153290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 38354501 - 38354542
Alignment:
Q  250 ttttataaaagtttgtgtaatcagtgtattggaaattgaaaa 291  Q
    |||||| |||||| |||||||||||||||| |||||||||||    
T  38354501 ttttattaaagttagtgtaatcagtgtattagaaattgaaaa 38354542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 39724064 - 39724132
Alignment:
Q  228 ttaagaaccttaaataataattttttataaaagtttgtgtaat-cagtgtattggaaattgaaaacttt 295  Q
    |||||||| ||||||  |||| |||||||||||||||| ||||  ||| ||||| ||||||||||||||    
T  39724064 ttaagaactttaaatggtaatattttataaaagtttgtataataaagtatattgtaaattgaaaacttt 39724132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 227 - 286
Target Start/End: Complemental strand, 16637699 - 16637640
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaatt 286  Q
    ||||||| | ||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  16637699 gttaagagctttaaataataattttttataaaagtttgtataatcagtgtattgaaaatt 16637640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 295
Target Start/End: Complemental strand, 10228448 - 10228359
Alignment:
Q  206 gaaatgttaactagtgatctggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||||||||||||||  ||  ||||  || ||||||| ||| |||||| |||||||||||||| ||||| || ||||||||||||||||    
T  10228448 gaaatgttaactagtgtcctaattaaagacattaaatagtaactttttaaaaaagtttgtgtaaccagtgcatcggaaattgaaaacttt 10228359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 295
Target Start/End: Original strand, 16636660 - 16636728
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||| |||||||||  ||| |||||||||||||||||||||| |||| |||| ||||||| ||||||    
T  16636660 gttaaggaccttaaatggtaactttttataaaagtttgtgtaattagtgcattgaaaattgacaacttt 16636728  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 295
Target Start/End: Complemental strand, 39177769 - 39177722
Alignment:
Q  248 ttttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  39177769 ttttttataaaaagttgtgcaatcagtgtattggaaattgaaaacttt 39177722  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 297
Target Start/End: Complemental strand, 28639665 - 28639591
Alignment:
Q  224 ctggttaagaaccttaaataataattttttataaaagtttgtgtaat-cagtgtattggaaattgaaaactttaa 297  Q
    |||| |||| || |||||||| |||||||||||||||||||||||||  |||| |||||||  ||||||||||||    
T  28639665 ctggataaggactttaaataacaattttttataaaagtttgtgtaataaagtgcattggaagctgaaaactttaa 28639591  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 26432371 - 26432302
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttta 296  Q
    ||||||||||| ||||  ||| ||||||| |||||| |||||||||||  ||||||||||||||| ||||    
T  26432371 gttaagaacctaaaatggtaaatttttatgaaagttagtgtaatcagtacattggaaattgaaaagttta 26432302  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 4695163 - 4695111
Alignment:
Q  245 taattttttataaaagtttgtgtaatcagtgtattggaaattgaaaactttaa 297  Q
    |||||||||||  |||||||| ||||||||| |||||||||| ||||||||||    
T  4695163 taattttttatggaagtttgtataatcagtgcattggaaattaaaaactttaa 4695111  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 21259412 - 21259479
Alignment:
Q  224 ctggttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaa 291  Q
    ||||||||  ||||||||| |||| |||||||  |||||||||||||||||| |||| ||||| ||||    
T  21259412 ctggttaaagaccttaaatgataactttttatggaagtttgtgtaatcagtgcattgaaaattaaaaa 21259479  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 36609150 - 36609196
Alignment:
Q  249 tttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||||||||||||||||||| |||  |||| ||||||||||||||    
T  36609150 tttttataaaagtttgtgtaattagtacattgaaaattgaaaacttt 36609196  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Complemental strand, 22601877 - 22601820
Alignment:
Q  234 accttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaa 291  Q
    ||||||||| |||| ||||||||||| ||||| |||||||| ||||| ||||| ||||    
T  22601877 accttaaatgataaatttttataaaaatttgtataatcagtttattgaaaattaaaaa 22601820  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 26686661 - 26686717
Alignment:
Q  239 aaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||| ||| ||||||| |||||||||||||||  ||||||| ||||| ||||||||    
T  26686661 aaatactaactttttatgaaagtttgtgtaatcgatgtattgaaaattaaaaacttt 26686717  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 26956392 - 26956448
Alignment:
Q  239 aaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||| ||| ||||||| |||||||||||||||  ||||||| ||||| ||||||||    
T  26956392 aaatactaactttttatgaaagtttgtgtaatcgatgtattgaaaattaaaaacttt 26956448  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 27794856 - 27794920
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaa 291  Q
    |||||| || ||||||  ||||||||||||||||||||| ||||||  | ||| |||||||||||    
T  27794856 gttaaggactttaaatggtaattttttataaaagtttgtataatcatcgcatttgaaattgaaaa 27794920  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 10364852 - 10364784
Alignment:
Q  227 gttaagaaccttaaataataattttttataaaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    |||||| |||||||||| ||| ||||||| |||||| || ||||||||| |||| ||||||||||||||    
T  10364852 gttaaggaccttaaatagtaaatttttatgaaagttcgtataatcagtgcattgtaaattgaaaacttt 10364784  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 295
Target Start/End: Complemental strand, 23344684 - 23344612
Alignment:
Q  224 ctggttaagaaccttaaataataattttttataaaagtttgtgtaat-cagtgtattggaaattgaaaacttt 295  Q
    ||||||| | || ||||||  ||| ||||||||||||||||||||||  |||| ||||||||||||| |||||    
T  23344684 ctggttatgcactttaaatggtaactttttataaaagtttgtgtaataaagtgcattggaaattgaacacttt 23344612  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 295
Target Start/End: Original strand, 29716758 - 29716830
Alignment:
Q  224 ctggttaagaaccttaaataataattttttataaaagtttgtgtaatca-gtgtattggaaattgaaaacttt 295  Q
    ||||||||| || ||||||  |||  |||||| |||||||||||||| | ||| |||||||||||||||||||    
T  29716758 ctggttaaggactttaaatggtaaccttttatgaaagtttgtgtaataaagtgcattggaaattgaaaacttt 29716830  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 295
Target Start/End: Complemental strand, 26780 - 26742
Alignment:
Q  257 aaagtttgtgtaatcagtgtattggaaattgaaaacttt 295  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  26780 aaagtttgtgtaatcagtgcattgaaaattgaaaacttt 26742  T

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