View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3461_low_10 (Length: 381)

Name: NF3461_low_10
Description: NF3461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3461_low_10
NF3461_low_10
[»] chr2 (3 HSPs)
chr2 (10-176)||(43522921-43523087)
chr2 (240-367)||(43522730-43522857)
chr2 (42-139)||(4113276-4113372)
[»] chr8 (2 HSPs)
chr8 (10-176)||(12869295-12869461)
chr8 (240-367)||(12869525-12869652)
[»] chr5 (6 HSPs)
chr5 (10-176)||(14007175-14007341)
chr5 (41-170)||(23123491-23123620)
chr5 (240-349)||(14007002-14007111)
chr5 (240-337)||(23123688-23123785)
chr5 (10-76)||(23123412-23123478)
chr5 (10-73)||(23123364-23123427)
[»] chr7 (3 HSPs)
chr7 (10-176)||(41594317-41594480)
chr7 (240-367)||(41594126-41594253)
chr7 (41-173)||(42452749-42452878)
[»] chr3 (4 HSPs)
chr3 (10-176)||(22512000-22512163)
chr3 (240-367)||(22512210-22512337)
chr3 (10-73)||(22511952-22512015)
chr3 (245-301)||(39702798-39702855)
[»] chr1 (1 HSPs)
chr1 (240-301)||(48725121-48725183)
[»] chr4 (1 HSPs)
chr4 (245-301)||(42883957-42884014)


Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 43523087 - 43522921
Alignment:
Q  10 acatcatcaggttgagtcatatgagttatgtcttcttcaattcttggaactttaacaggttgagatggaggagtcattccttgttcatctctttcactct 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43523087 acatcaacaggttgagtcatatgagttatgtcttcttcaattcttggaactttaataggttgagatggaggagtcattccttgttcatctctttcactct 43522988  T
Q  110 cacaagctctcttcttataaaaatgatcaagtgttacactcttcttcttcttaacttttctgttttc 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43522987 cacaagctctcttcttataaaaatgatcaagtgttacactcttcttcttcttaacttttctgttttc 43522921  T

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Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 240 - 367
Target Start/End: Complemental strand, 43522857 - 43522730
Alignment:
Q  240 cacttatgcttcaaaagtttaattgaaaacaattagaacatattcattgcaaataacacattggcacattgctactgccatagaaaaacattcatttatg 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43522857 cacttatgcttcaaaagtttaattgaaaacaattagaacatattcattgcaaataacacattggcacattgccactgccatagaaaaacattcatttatg 43522758  T
Q  340 aacaaaatgtgaacaaaatgttgctact 367  Q
    ||||||||||||||||||||||||||||    
T  43522757 aacaaaatgtgaacaaaatgttgctact 43522730  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 139
Target Start/End: Complemental strand, 4113372 - 4113276
Alignment:
Q  42 ttcttcaattcttggaactttaacaggttgagatggaggagtcattccttgttcatctctttcactctcacaagctctcttcttataaaaatgatcaa 139  Q
    |||||||||||||  ||||||||||||||| |||| |  ||  |||| ||||||||||||||||||| ||||| || || | ||| ||||||||||||    
T  4113372 ttcttcaattcttaaaactttaacaggttgtgatgtataagatattctttgttcatctctttcactcccacaaactttcctttta-aaaaatgatcaa 4113276  T

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Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 12869295 - 12869461
Alignment:
Q  10 acatcatcaggttgagtcatatgagttatgtcttcttcaattcttggaactttaacaggttgagatggaggagtcattccttgttcatctctttcactct 109  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12869295 acatcaacaggttgagtcatatgagttatgtcttcttcaattcttgaaactttaataggttgagatggaggagtcattccttgttcatctctttcactct 12869394  T
Q  110 cacaagctctcttcttataaaaatgatcaagtgttacactcttcttcttcttaacttttctgttttc 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12869395 cacaagctctcttcttataaaaatgatcaagtgttacactcttcttcttcttaacttttctgttttc 12869461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 240 - 367
Target Start/End: Original strand, 12869525 - 12869652
Alignment:
Q  240 cacttatgcttcaaaagtttaattgaaaacaattagaacatattcattgcaaataacacattggcacattgctactgccatagaaaaacattcatttatg 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12869525 cacttatgcttcaaaagtttaattgaaaacaattagaacatattcattgcaaataacacattggcacattgctactgccatagaaaaacattcatttatg 12869624  T
Q  340 aacaaaatgtgaacaaaatgttgctact 367  Q
    ||||||||||||||||||||||||||||    
T  12869625 aacaaaatgtgaacaaaatgttgctact 12869652  T

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Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 14007341 - 14007175
Alignment:
Q  10 acatcatcaggttgagtcatatgagttatgtcttcttcaattcttggaactttaacaggttgagatggaggagtcattccttgttcatctctttcactct 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14007341 acatcaacaggttgagtcatatgagttatgtcttcttcaattcttggaactttaataggttgagatggaggagtcattccttgttcatctctttcactct 14007242  T
Q  110 cacaagctctcttcttataaaaatgatcaagtgttacactcttcttcttcttaacttttctgttttc 176  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14007241 cacaaactctcttcttataaaaatgatcaagtgttacactcttcttcttcttaacttttctgttttc 14007175  T

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Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 41 - 170
Target Start/End: Original strand, 23123491 - 23123620
Alignment:
Q  41 cttcttcaattcttggaactttaacaggttgagatggaggagtcattccttgttcatctctttcactctcacaagctctcttcttataaaaatgatcaag 140  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23123491 cttcttcaattatggaaactttaacaggttgagatggaggagtcattccttgttcatctctttcactctcacaagctctcttcttataaaaatgatcaag 23123590  T
Q  141 tgttacactcttcttcttcttaacttttct 170  Q
    ||||| ||||||||||||||||||||||||    
T  23123591 tgttatactcttcttcttcttaacttttct 23123620  T

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Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 240 - 349
Target Start/End: Complemental strand, 14007111 - 14007002
Alignment:
Q  240 cacttatgcttcaaaagtttaattgaaaacaattagaacatattcattgcaaataacacattggcacattgctactgccatagaaaaacattcatttatg 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14007111 cacttatgcttcaaaagtttaattgaaaacaattagaacatattcattgcaaataacacattggcacattgctactgccatagaaaaacattcatttatg 14007012  T
Q  340 aacaaaatgt 349  Q
    ||||||||||    
T  14007011 aacaaaatgt 14007002  T

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Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 240 - 337
Target Start/End: Original strand, 23123688 - 23123785
Alignment:
Q  240 cacttatgcttcaaaagtttaattgaaaacaattagaacatattcattgcaaataacacattggcacattgctactgccatagaaaaacattcattta 337  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23123688 cacttatgcttcaaaagtttaattggaaacaattagaacatattcattgcaaataacacattggcacattgctactgccatataaaaacattcattta 23123785  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 23123412 - 23123478
Alignment:
Q  10 acatcatcaggttgagtcatatgagttatgtcttcttcaattcttggaactttaacaggttgagatg 76  Q
    |||||| ||||||||||||||||| |||||||||||| |||||||||||| | || |||||||||||    
T  23123412 acatcaacaggttgagtcatatgaattatgtcttctttaattcttggaacatcaataggttgagatg 23123478  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 23123364 - 23123427
Alignment:
Q  10 acatcatcaggttgagtcatatgagttatgtcttcttcaattcttggaactttaacaggttgag 73  Q
    |||||| || |||||||  ||||||||||||||||||||||||||||||| | |||||||||||    
T  23123364 acatcaacatgttgagttgtatgagttatgtcttcttcaattcttggaacatcaacaggttgag 23123427  T

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Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 41594480 - 41594317
Alignment:
Q  10 acatcatcaggttgagtcatatgagttatgtcttcttcaattcttggaactttaacaggttgagatggaggagtcattccttgttcatctctttcactct 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41594480 acatcaacaggttgagtcatatgagttatgtcttcttcaattcttggaactttaataggttgagatggaggagtcattccttgttcatctctttcactct 41594381  T
Q  110 cacaagctctcttcttataaaaatgatcaagtgttacactcttcttcttcttaacttttctgttttc 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  41594380 cacaagctctcttcttataaaaatgatcaagtgttacactcttct---tcttaacttttctgttttc 41594317  T

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Target: chr7; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 240 - 367
Target Start/End: Complemental strand, 41594253 - 41594126
Alignment:
Q  240 cacttatgcttcaaaagtttaattgaaaacaattagaacatattcattgcaaataacacattggcacattgctactgccatagaaaaacattcatttatg 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41594253 cacttatgcttcaaaagtttaattgaaaacaattagaacatattcattgcaaataacacattggcacattgctactgccatagaaaaacattcatttatg 41594154  T
Q  340 aacaaaatgtgaacaaaatgttgctact 367  Q
    ||||||||||||||||||||||||||||    
T  41594153 aacaaaatgtgaacaaaatgttgctact 41594126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 41 - 173
Target Start/End: Complemental strand, 42452878 - 42452749
Alignment:
Q  41 cttcttcaattcttggaactttaacaggttgagatggaggagtcattccttgttcatctctttcactctcacaagctctcttcttataaaaatgatcaag 140  Q
    |||||||||||||  ||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||  | || ||||||||||||||| |||    
T  42452878 cttcttcaattctgagaactttaacaggatgagatggaagagtcattccttgttcatctctgtcactctcacaaagtttcctcttataaaaatgattaag 42452779  T
Q  141 tgttacactcttcttcttcttaacttttctgtt 173  Q
    ||||| ||||||||   ||||||||||||||||    
T  42452778 tgttatactcttct---tcttaacttttctgtt 42452749  T

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Target: chr3 (Bit Score: 141; Significance: 8e-74; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 10 - 176
Target Start/End: Original strand, 22512000 - 22512163
Alignment:
Q  10 acatcatcaggttgagtcatatgagttatgtcttcttcaattcttggaactttaacaggttgagatggaggagtcattccttgttcatctctttcactct 109  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22512000 acatcaacaggttgagtcatatgagttatgtcttcttcaattcatggaactttaacaggttgagatggaggagtcattccttgttcatctctttcactct 22512099  T
Q  110 cacaagctctcttcttataaaaatgatcaagtgttacactcttcttcttcttaacttttctgttttc 176  Q
    |||||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||    
T  22512100 cacaagctctcttcttataaaaatgatcaagtgttatac---tcttcttcttaacttttctgttttc 22512163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 240 - 367
Target Start/End: Original strand, 22512210 - 22512337
Alignment:
Q  240 cacttatgcttcaaaagtttaattgaaaacaattagaacatattcattgcaaataacacattggcacattgctactgccatagaaaaacattcatttatg 339  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22512210 cacttatgcttcaaaagtttaattggaaacaattagaacatattcattgcaaataacacattggcacattgcgactgccatagaaaaacattcatttatg 22512309  T
Q  340 aacaaaatgtgaacaaaatgttgctact 367  Q
    ||||||||||||||||||||||||||||    
T  22512310 aacaaaatgtgaacaaaatgttgctact 22512337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 22511952 - 22512015
Alignment:
Q  10 acatcatcaggttgagtcatatgagttatgtcttcttcaattcttggaactttaacaggttgag 73  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||||||| | |||||||||||    
T  22511952 acatcaacaggttgagttgtatgagttatgtcttcttcaattcttggaacatcaacaggttgag 22512015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 39702855 - 39702798
Alignment:
Q  245 atgcttcaaaagtttaattgaaaacaattagaacatattcattgcaaat-aacacatt 301  Q
    ||||||||||||||||| || |||| ||||||||||||||||||||||| ||||||||    
T  39702855 atgcttcaaaagtttaactggaaacgattagaacatattcattgcaaatgaacacatt 39702798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 301
Target Start/End: Original strand, 48725121 - 48725183
Alignment:
Q  240 cacttatgcttcaaaagtttaattgaaaacaattagaacatattcattgcaaat-aacacatt 301  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  48725121 cactgatgcttcaaaagtttaattggaaacaattagaacatattcattgcaaatgaacacatt 48725183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 42883957 - 42884014
Alignment:
Q  245 atgcttcaaaagtttaattgaaaacaattagaacatattcattgcaaat-aacacatt 301  Q
    ||||||||||||||||| || ||||||||||||||||||||||| |||| ||||||||    
T  42883957 atgcttcaaaagtttaactggaaacaattagaacatattcattgaaaatgaacacatt 42884014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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