View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3461_low_11 (Length: 349)

Name: NF3461_low_11
Description: NF3461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3461_low_11
NF3461_low_11
[»] chr7 (6 HSPs)
chr7 (1-330)||(44945157-44945499)
chr7 (1-41)||(19849380-19849420)
chr7 (1-47)||(17756814-17756860)
chr7 (4-47)||(1075852-1075895)
chr7 (194-242)||(33965764-33965812)
chr7 (180-228)||(40659980-40660028)
[»] chr4 (1 HSPs)
chr4 (1-47)||(45071248-45071294)
[»] chr2 (1 HSPs)
chr2 (5-47)||(13764826-13764868)
[»] scaffold0001 (1 HSPs)
scaffold0001 (4-48)||(181734-181778)
[»] chr3 (2 HSPs)
chr3 (4-48)||(25644824-25644868)
chr3 (15-47)||(47100079-47100111)


Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 44945157 - 44945499
Alignment:
Q  1 atcaatcaagcaatattaccaccacacgagttaacaatgttgcacataggattttatttgaatgaaggagagaagaatttatttttaggttttgttacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44945157 atcaatcaagcaatattaccaccacacgagttaacaatgtagcacataggattttatttgaatgaaggagagaagaatttctttttaggttttgttacaa 44945256  T
Q  101 atataggattctgcagataggttttgttcaaataaaatcgttgttgtcgaaggtatttgttcgttctcgtagaagatgggaggattgttgaatggaaagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44945257 atataggattctgcagataggttttgttcaaataaaatcgttgttgtcgaaggtatttgttcgttctcgtagaagatgggaggattgttgaatggaaagc 44945356  T
Q  201 caatggaagtattcagagaagggatttgtttggctataaattattggtgggagattcgttgctttgttggacgggagtttggtggtaacc--aa------ 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||          
T  44945357 caatggaagtattcagagaagggatttgtttggctataaattattggtgggagattcgttgctttgttggacgggagtttggtggtaaccttaatcaact 44945456  T
Q  293 -----actccctatttcaatccgatcaagatcaaattgttacg 330  Q
         ||||||||||||||||||||||||||||||||||||||    
T  44945457 tagtgactccctatttcaatccgatcaagatcaaattgttacg 44945499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19849420 - 19849380
Alignment:
Q  1 atcaatcaagcaatattaccaccacacgagttaacaatgtt 41  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  19849420 atcaatcaagcaatattaccaccacaccagttaacaatgtt 19849380  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17756814 - 17756860
Alignment:
Q  1 atcaatcaagcaatattaccaccacacgagttaacaatgttgcacat 47  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  17756814 atcaatctagcaatattaccaccacaccagttaacaatgatgcacat 17756860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 1075895 - 1075852
Alignment:
Q  4 aatcaagcaatattaccaccacacgagttaacaatgttgcacat 47  Q
    ||||| |||| ||||||||||||| |||||||||||||||||||    
T  1075895 aatcatgcaaaattaccaccacaccagttaacaatgttgcacat 1075852  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 33965764 - 33965812
Alignment:
Q  194 ggaaagccaatggaagtattcagagaagggatttgtttggctataaatt 242  Q
    |||||| |||||||||||||||| || ||||||||||||| ||| ||||    
T  33965764 ggaaagtcaatggaagtattcagggaggggatttgtttggttatcaatt 33965812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 40659980 - 40660028
Alignment:
Q  180 gaggattgttgaatggaaagccaatggaagtattcagagaagggatttg 228  Q
    |||||||| |||||||| ||||||||||| | |||| ||||||||||||    
T  40659980 gaggattgctgaatggagagccaatggaatttttcaaagaagggatttg 40660028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 45071248 - 45071294
Alignment:
Q  1 atcaatcaagcaatattaccaccacacgagttaacaatgttgcacat 47  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  45071248 atcaatcaagcaatattaccaccacaccagttaacaatgttgcacat 45071294  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 13764826 - 13764868
Alignment:
Q  5 atcaagcaatattaccaccacacgagttaacaatgttgcacat 47  Q
    |||| |||| ||||||||||||| |||||||||||||||||||    
T  13764826 atcatgcaaaattaccaccacaccagttaacaatgttgcacat 13764868  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 181734 - 181778
Alignment:
Q  4 aatcaagcaatattaccaccacacgagttaacaatgttgcacata 48  Q
    ||||| |||| ||||||||||||| | ||||||||||||||||||    
T  181734 aatcatgcaaaattaccaccacaccaattaacaatgttgcacata 181778  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 25644824 - 25644868
Alignment:
Q  4 aatcaagcaatattaccaccacacgagttaacaatgttgcacata 48  Q
    ||||| |||| ||||||||||||| | ||||||||||||||||||    
T  25644824 aatcatgcaaaattaccaccacaccacttaacaatgttgcacata 25644868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 47100079 - 47100111
Alignment:
Q  15 attaccaccacacgagttaacaatgttgcacat 47  Q
    ||||||||||||| |||||||||||||||||||    
T  47100079 attaccaccacaccagttaacaatgttgcacat 47100111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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