View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3461_low_15 (Length: 264)
Name: NF3461_low_15
Description: NF3461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3461_low_15 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 114 - 264
Target Start/End: Original strand, 928365 - 928515
Alignment:
| Q |
114 |
aactaggtttcttatattctactgcatacacatactaggttatgatgcactctgattcatgtatatatacccttgtaatcattcaatcatcaataacaat |
213 |
Q |
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| T |
928365 |
aactaggtttcttatattctactgcataaacatactaggttatgatgcactctgattcatgtatatatacccttgtaatcattcaatcatcaataacaat |
928464 |
T |
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| Q |
214 |
tcacctttactcattttatcttgtttcctaatatggtatcacgcgccttct |
264 |
Q |
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| T |
928465 |
tcacttttacttattttatcttgtttcataatatggtatcacgcgccttct |
928515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 120 - 264
Target Start/End: Complemental strand, 23169925 - 23169783
Alignment:
| Q |
120 |
gtttcttatattctactgcatacacatactaggttatgatgcactctgattcatgtatatatacccttgtaatcattcaatcatcaataacaattcacct |
219 |
Q |
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| T |
23169925 |
gtttcttatatactactgcttacaca--ctaggttatgatgcactttaattcatgtatatatagccttgtaatcattcaatcatcaacataatttcactt |
23169828 |
T |
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| Q |
220 |
ttactcattttatcttgtttcctaatatggtatcacgcgccttct |
264 |
Q |
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| T |
23169827 |
ttacttctttcatctagcttcctgatatggtatcacgcgccttct |
23169783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 23165193 - 23165109
Alignment:
| Q |
120 |
gtttcttatattctactgcatacacatactaggttatgatgcactctgattcatgtatatatacccttgtaatcattcaatcatcaa |
206 |
Q |
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| T |
23165193 |
gtttcttatatactactgcttacaca--ctaggttatgatgcactttaatttatgtatatatagccttgtaatcattcaatcatcaa |
23165109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 125 - 246
Target Start/End: Original strand, 10202987 - 10203109
Alignment:
| Q |
125 |
ttatattctactgcatacacatactaggttatgatgcactctgattcatgtatatataccc-ttgtaatcattcaatcatcaataacaattcacctttac |
223 |
Q |
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| T |
10202987 |
ttatattctattgcatgcacactctaggttactatgcactctgattcttgtatatatactcattgtaatcattctatcatcaataacaattcacttttat |
10203086 |
T |
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| Q |
224 |
tcattttatcttgtttcctaata |
246 |
Q |
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| T |
10203087 |
tcattttctcttgtttcctaata |
10203109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 94 - 264
Target Start/End: Original strand, 30498172 - 30498342
Alignment:
| Q |
94 |
cttgttctacaagtaatagaaactaggtttcttatattctactgcatacacatactaggttatgatgcactctgattcatgtatatataccc-ttgtaat |
192 |
Q |
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| T |
30498172 |
cttgttgtacaagtaacagatactagggttct-atacgctactgcatgcatagtttaggttatcatgcactgagatccttgtatatatacacattgtaat |
30498270 |
T |
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| Q |
193 |
cattcaatcatcaataacaattcacctttactcattttatcttgtttcctaatatggtatcacgcgccttct |
264 |
Q |
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| T |
30498271 |
cattcaatcatcaatgagaattcacatttcttcactctttcttgtttcctaatatggtatcacgcgccttct |
30498342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 246
Target Start/End: Original strand, 27982870 - 27983022
Alignment:
| Q |
94 |
cttgttctacaagtaatagaaactaggtttcttatattctactgcatacacatactaggttatgatgcactctgattcatgtatatataccc-ttgtaat |
192 |
Q |
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| T |
27982870 |
cttgttgtacaagtaacagatactagggtt-ttatattttactgaatgtatattttaggttaccatgccctgagattcttgtatatatacacattgtaat |
27982968 |
T |
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| Q |
193 |
cattcaatcatcaataacaattcacctttactcattttatcttgtttcctaata |
246 |
Q |
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| T |
27982969 |
cattctatcatcaatgagaattcacatttattcattctttcttgtttcctaata |
27983022 |
T |
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