View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3461_low_2 (Length: 762)

Name: NF3461_low_2
Description: NF3461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3461_low_2
NF3461_low_2
[»] chr4 (1 HSPs)
chr4 (402-762)||(25900058-25900419)
[»] chr7 (5 HSPs)
chr7 (22-235)||(6889025-6889248)
chr7 (1-233)||(6844011-6844250)
chr7 (43-241)||(9235844-9236051)
chr7 (110-217)||(30598302-30598409)
chr7 (29-147)||(32413597-32413719)
[»] chr3 (12 HSPs)
chr3 (402-745)||(40067818-40068135)
chr3 (7-87)||(7125963-7126043)
chr3 (7-146)||(476013-476156)
chr3 (7-85)||(778168-778246)
chr3 (19-85)||(5361011-5361077)
chr3 (24-94)||(25601737-25601807)
chr3 (24-93)||(25596933-25597002)
chr3 (45-88)||(480987-481030)
chr3 (45-88)||(1186267-1186310)
chr3 (45-88)||(1204331-1204374)
chr3 (45-88)||(1304716-1304759)
chr3 (36-91)||(21537070-21537125)
[»] chr8 (2 HSPs)
chr8 (7-94)||(27701867-27701954)
chr8 (24-89)||(35335884-35335949)
[»] chr5 (3 HSPs)
chr5 (45-88)||(33958083-33958126)
chr5 (22-64)||(25216001-25216043)
chr5 (22-64)||(25280153-25280195)
[»] chr6 (2 HSPs)
chr6 (7-88)||(7175395-7175476)
chr6 (43-88)||(33844287-33844332)
[»] scaffold0438 (1 HSPs)
scaffold0438 (45-88)||(5353-5396)
[»] scaffold1462 (1 HSPs)
scaffold1462 (42-92)||(1037-1087)


Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 402 - 762
Target Start/End: Complemental strand, 25900419 - 25900058
Alignment:
Q  402 gagacctgttgtgccatttggtagtgcaagtagaaagcctcatgttgattcttctcttttacaccgttgcttaccagatgagctgctctttgaggtattg 501  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25900419 gagacctgttgcgccatttggtagtgcaagtagaaagcctcatgttgattcttctcttttacaccgttgcttaccagatgagctgctctttgaggtattg 25900320  T
Q  502 tatttcacatgatgtatgtaaactacactatttggtcatgactttttgatatggtgtgagaccagttacaatgtgcgggagtagttggtttgtttgcggt 601  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  25900319 tatttcacatgatgtatgt-aactacactatttggtcatgactttttgatatggtgtgagaccagttacaatgtgtgggagtagttggtttgtttgcgtt 25900221  T
Q  602 tgtatgctcatact-----tcagataactcatctgcgatatttggcgtaggtctgtttggtcattttatgtaacaacgttagaagaagacattaacaaag 696  Q
    ||||||||||||||     ||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||   |||||||||||||||||    
T  25900220 tgtatgctcatacttcagatcagataactcatgtacgatatttggcgtgggtctgtttggtcattttatgtaacaacgtt---agaagacattaacaaag 25900124  T
Q  697 ctcttcatacacttgaaacttaaaagaaggcatcatttttacaatattaaattaaaaaatcatcta 762  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25900123 ctcttcgtacacttgaaacttaaaagaaggcatcatttttacaatattaaattaaaaaatcatcta 25900058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 2e-51; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 6889248 - 6889025
Alignment:
Q  22 ttaatataagggttggaagatgtttccagagattgttccatctgttggataaaatgcaagtttgaacagc----atggcgtaaacaaaagagagtatgtg 117  Q
    ||||||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||    |||| ||  | |||||||||||||||    
T  6889248 ttaatataagggtaggaagatatttccagagattgttccatcttttggatagaatgcaagtttgaacagcgtctatggtgtccaaaaaagagagtatgtg 6889149  T
Q  118 aagaataacacaatcggataaatcactgagg------tgatcttcttttacatcgacgttgcattttcttcttcctcacttcattgtttcagaacctgtg 211  Q
    ||||||||||||||||| ||| |||||||||      | |||||||||||||||| ||||| ||||| ||||||||  ||||||||||||||||||||||    
T  6889148 aagaataacacaatcgggtaagtcactgaggcgatcttcatcttcttttacatcgtcgttgtatttttttcttcctggcttcattgtttcagaacctgtg 6889049  T
Q  212 agttagttagaagctattcagcga 235  Q
    ||| ||| |||||  |||||||||    
T  6889048 agtgagtaagaagtgattcagcga 6889025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 6844250 - 6844011
Alignment:
Q  1 tactcataaagtgtgatgaatttaatataagggttggaagatgtttccagagattgttccatctgttggataaaatgcaagtttgaacagc--atggcgt 98  Q
    ||||| |||||||||| |  || |||||||| || |||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||  || || |    
T  6844250 tactcgtaaagtgtgaagtcttcaatataagagtgggaagatgtttccaaagattgttccatcttttggatagaatgcaagtttgaacagcgcattgcat 6844151  T
Q  99 aaacaaaagagagtatgtgaagaataacacaatcggataaatcactgaggtgatcttcttttacatcgacgttgcattttcttcttcctcacttcattg- 197  Q
      | |||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||| ||||  |||||||||||| |   |||||||     
T  6844150 ccaaaaaagagagtatgtgaagaataacacaatcgggtaaatcactgaggcggtcttcttctacatcgtcgttatattttcttcttctttgtttcattgt 6844051  T
Q  198 ----tttcagaacctgtgagttagttagaagctattcagc 233  Q
        ||||||||||||||||| ||||||||||||||||||    
T  6844050 ttcgtttcagaacctgtgagtgagttagaagctattcagc 6844011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 43 - 241
Target Start/End: Original strand, 9235844 - 9236051
Alignment:
Q  43 gtttccagagattgttccatctgttggataaaatgcaagtttgaacagcat----ggcgtaaacaaaagagagtatgtgaagaataacacaatcggataa 138  Q
    ||||||| |||||||||||||| ||||| | |||||||||||||||| ||     |||||  | || ||||| ||||||||||||||||||||||| |||    
T  9235844 gtttccaaagattgttccatcttttggagagaatgcaagtttgaacaacacattcggcgtccaaaacagagattatgtgaagaataacacaatcgggtaa 9235943  T
Q  139 atcactgaggtgatcttcttttacatcgacgttgcattttcttcttcctcacttca-----ttgtttcagaacctgtgagttagttagaagctattcagc 233  Q
    |||| ||||| | |||||||||| || | ||     ||||||||||||||  || |     |||||| |||||||||| || |||||||||||||| |||    
T  9235944 atcattgaggcggtcttcttttaaatggtcgcgatcttttcttcttcctcttttgatcgttttgtttgagaacctgtgggtgagttagaagctatttagc 9236043  T
Q  234 gacaatta 241  Q
    ||||||||    
T  9236044 gacaatta 9236051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 30598302 - 30598409
Alignment:
Q  110 agtatgtgaagaataacacaatcggataaatcactgaggtgatcttcttttacatcgacgttgcattttcttcttcctcacttcattgtttcagaacctg 209  Q
    |||||| |||||| |||||||| || ||||||||||||| ||||||||||||||| | |||||  |||| |||||||||  |||||||| |  ||| |||    
T  30598302 agtatgcgaagaagaacacaattgggtaaatcactgaggcgatcttcttttacatagtcgttgtgtttttttcttcctcgtttcattgtctgtgaagctg 30598401  T
Q  210 tgagttag 217  Q
    ||||||||    
T  30598402 tgagttag 30598409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 32413719 - 32413597
Alignment:
Q  29 aagggttggaagatgtttccagagattgttccatctgttggataaaatgcaagtttgaacagc----atggcgtaaacaaaagagagtatgtgaagaata 124  Q
    ||||| ||||||| | ||||||||||| ||||||||  |||| ||||||||||||||||| ||     ||| ||  | | | |||||||||||||| | |    
T  32413719 aagggatggaagacgcttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaa 32413620  T
Q  125 acacaatcggataaatcactgag 147  Q
    |||||||| ||||||||||||||    
T  32413619 acacaatcagataaatcactgag 32413597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 2e-51; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 402 - 745
Target Start/End: Original strand, 40067818 - 40068135
Alignment:
Q  402 gagacctgttgtgccatttggtagtgcaagtagaaagcctcatgttgattcttctcttttacaccgttgcttaccagatgagctgctctttgaggtattg 501  Q
    ||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40067818 gagacctgtcgcgccttttggaagtgcaagtagaaagcctcatgttgattcttctcttttacatcgttgcttaccagatgagctgctctttgaggtattg 40067917  T
Q  502 tatttcacatgatgtatgtaaactacactatttggtcatgactttttgatatggtgtgagaccagttacaatgtgcgggagtagttggtttgtttgcggt 601  Q
     |||||| ||||||      | |||||||||||| ||||||||| ||||||| |||||| || |||||              | ||  |||||     ||    
T  40067918 catttcatatgatg-----cagctacactatttgatcatgacttcttgatattgtgtgacactagtta--------------actttatttgt-----gt 40067993  T
Q  602 tgtatgctcatacttcagataactcatctgcgatatttggcgtaggtctgtttggtca-ttttatgtaacaacgttagaagaagacattaacaaagctct 700  Q
    |||||| || ||||||||| ||||||| |||||||||||  || | |||||||||||| ||||||| |||| ||||   ||||||||||  || | ||||    
T  40067994 tgtatgttcctacttcagacaactcatatgcgatatttgatgtggatctgtttggtcatttttatgcaacatcgtt---agaagacattggcagatctct 40068090  T
Q  701 tcatacacttgaaacttaaaagaaggcatcatttttacaatatta 745  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  40068091 tcatacacctgaaacttaaatgaaggcatcatttttacaatatta 40068135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 7126043 - 7125963
Alignment:
Q  7 taaagtgtgatgaatttaatataagggttggaagatgtttccagagattgttccatctgttggataaaatgcaagtttgaa 87  Q
    |||| ||||| ||| ||||| |||||||||||||| ||||||||||||| |||||||| ||||| || || ||||||||||    
T  7126043 taaattgtgaagaaattaatgtaagggttggaagacgtttccagagattcttccatcttttggacaagatacaagtttgaa 7125963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 476156 - 476013
Alignment:
Q  7 taaagtgtgatgaatttaatataagggttggaagatgtttccagagattgttccatctgttggataaaatgcaagtttgaacagc----atggcgtaaac 102  Q
    |||||| ||| ||| ||| | ||||||| ||||||   |||||||||||| ||||||| ||||||||||| ||||||||||| ||     ||||||  |     
T  476156 taaagtttgaagaacttagtgtaagggtgggaagagtattccagagattgatccatcttttggataaaatacaagtttgaacggcttctttggcgtttaa 476057  T
Q  103 aaaagagagtatgtgaagaataacacaatcggataaatcactga 146  Q
    ||| |||||| ||||||| | || |||||| |||||||||||||    
T  476056 aaaggagagtgtgtgaaggagaatacaatctgataaatcactga 476013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 778168 - 778246
Alignment:
Q  7 taaagtgtgatgaatttaatataagggttggaagatgtttccagagattgttccatctgttggataaaatgcaagtttg 85  Q
    |||||||||| ||| ||||| |||| || || |||  ||||||||||||| ||||||| ||||| ||||||||||||||    
T  778168 taaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttg 778246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 5361011 - 5361077
Alignment:
Q  19 aatttaatataagggttggaagatgtttccagagattgttccatctgttggataaaatgcaagtttg 85  Q
    ||||||||  ||| |||||||||   |||||||||||| ||||||| ||||||||||||||||||||    
T  5361011 aatttaatgcaagagttggaagagtcttccagagattggtccatcttttggataaaatgcaagtttg 5361077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 94
Target Start/End: Complemental strand, 25601807 - 25601737
Alignment:
Q  24 aatataagggttggaagatgtttccagagattgttccatctgttggataaaatgcaagtttgaacagcatg 94  Q
    ||||||||||| |||| | ||||||| ||||  ||||||||  |||| |||||||||||||||||||||||    
T  25601807 aatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacagcatg 25601737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 25597002 - 25596933
Alignment:
Q  24 aatataagggttggaagatgtttccagagattgttccatctgttggataaaatgcaagtttgaacagcat 93  Q
    ||||||||||| |||| ||||||||| ||||| ||||||||  | || ||||||||||||||||| ||||    
T  25597002 aatataagggtgggaatatgtttccaaagattcttccatctcgtagacaaaatgcaagtttgaacggcat 25596933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 481030 - 480987
Alignment:
Q  45 ttccagagattgttccatctgttggataaaatgcaagtttgaac 88  Q
    |||||||||||| ||||||| ||||||||||| |||||||||||    
T  481030 ttccagagattgatccatcttttggataaaatacaagtttgaac 480987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 1186310 - 1186267
Alignment:
Q  45 ttccagagattgttccatctgttggataaaatgcaagtttgaac 88  Q
    |||||||||||| ||||||| || ||||||||||||||||||||    
T  1186310 ttccagagattgatccatcttttcgataaaatgcaagtttgaac 1186267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 1204374 - 1204331
Alignment:
Q  45 ttccagagattgttccatctgttggataaaatgcaagtttgaac 88  Q
    |||||||||||| ||||||| || ||||||||||||||||||||    
T  1204374 ttccagagattgatccatcttttcgataaaatgcaagtttgaac 1204331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 1304716 - 1304759
Alignment:
Q  45 ttccagagattgttccatctgttggataaaatgcaagtttgaac 88  Q
    |||||||||||| ||||||| || ||||||||||||||||||||    
T  1304716 ttccagagattgatccatcttttcgataaaatgcaagtttgaac 1304759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 21537125 - 21537070
Alignment:
Q  36 ggaagatgtttccagagattgttccatctgttggataaaatgcaagtttgaacagc 91  Q
    |||||||||||||| ||||  |||||||| |||||||| || ||||||||||||||    
T  21537125 ggaagatgtttccaaagatccttccatcttttggataagatacaagtttgaacagc 21537070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 27701867 - 27701954
Alignment:
Q  7 taaagtgtgatgaatttaatataagggttggaagatgtttccagagattgttccatctgttggataaaatgcaagtttgaacagcatg 94  Q
    |||||||||| || |||||| |||||||||||||| ||||||||||||||||||||||  |||| | ||||  ||||||||| |||||    
T  27701867 taaagtgtgaggagtttaatctaagggttggaagacgtttccagagattgttccatcttgtggaaagaatggtagtttgaacggcatg 27701954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 35335949 - 35335884
Alignment:
Q  24 aatataagggttggaagatgtttccagagattgttccatctgttggataaaatgcaagtttgaaca 89  Q
    |||||||| ||||||| | ||||||| ||||  |||||||| ||||| |||| |||||||||||||    
T  35335949 aatataagtgttggaatacgtttccatagatgtttccatcttttggacaaaacgcaagtttgaaca 35335884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 33958083 - 33958126
Alignment:
Q  45 ttccagagattgttccatctgttggataaaatgcaagtttgaac 88  Q
    |||||||||||| ||||||| |||||||||||||||||||||||    
T  33958083 ttccagagattgatccatcttttggataaaatgcaagtttgaac 33958126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 25216043 - 25216001
Alignment:
Q  22 ttaatataagggttggaagatgtttccagagattgttccatct 64  Q
    ||||| |||||| || |||||||||||||||||||||||||||    
T  25216043 ttaatttaagggatgaaagatgtttccagagattgttccatct 25216001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 25280195 - 25280153
Alignment:
Q  22 ttaatataagggttggaagatgtttccagagattgttccatct 64  Q
    ||||| |||||| || |||||||||||||||||||||||||||    
T  25280195 ttaatttaagggatgaaagatgtttccagagattgttccatct 25280153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 88
Target Start/End: Original strand, 7175395 - 7175476
Alignment:
Q  7 taaagtgtgatgaatttaatataagggttggaagatgtttccagagattgttccatctgttggataaaatgcaagtttgaac 88  Q
    |||| ||||| ||| ||| ||||||| ||| |||  | ||||||||||| ||||||||  ||||||||||||||||||||||    
T  7175395 taaattgtgaagaacttactataaggtttgaaaggcgcttccagagattcttccatctagtggataaaatgcaagtttgaac 7175476  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 33844287 - 33844332
Alignment:
Q  43 gtttccagagattgttccatctgttggataaaatgcaagtttgaac 88  Q
    ||||||||||||  ||||||||| |||| |||||||||||||||||    
T  33844287 gtttccagagatgtttccatctggtggacaaaatgcaagtttgaac 33844332  T

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Target: scaffold0438 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 88
Target Start/End: Complemental strand, 5396 - 5353
Alignment:
Q  45 ttccagagattgttccatctgttggataaaatgcaagtttgaac 88  Q
    |||||||||||| ||||||| |||||||||||||| ||||||||    
T  5396 ttccagagattgatccatcttttggataaaatgcatgtttgaac 5353  T

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Target: scaffold1462 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold1462
Description:

Target: scaffold1462; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 1087 - 1037
Alignment:
Q  42 tgtttccagagattgttccatctgttggataaaatgcaagtttgaacagca 92  Q
    |||||||||| ||  |||||||| || ||||||||||||||||||||||||    
T  1087 tgtttccagatatctttccatctctttgataaaatgcaagtttgaacagca 1037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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