View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3461_low_22 (Length: 240)

Name: NF3461_low_22
Description: NF3461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3461_low_22
NF3461_low_22
[»] chr7 (5 HSPs)
chr7 (1-224)||(24203789-24204012)
chr7 (107-183)||(21604976-21605052)
chr7 (115-210)||(12421451-12421546)
chr7 (94-207)||(21601427-21601540)
chr7 (131-212)||(21611250-21611331)
[»] chr3 (12 HSPs)
chr3 (52-217)||(19603660-19603825)
chr3 (48-217)||(19563422-19563596)
chr3 (48-176)||(19581337-19581466)
chr3 (48-151)||(19549176-19549280)
chr3 (48-217)||(19539007-19539181)
chr3 (115-215)||(19612247-19612347)
chr3 (56-136)||(19557181-19557261)
chr3 (48-213)||(19593482-19593648)
chr3 (55-183)||(19609555-19609682)
chr3 (55-151)||(19653547-19653643)
chr3 (53-215)||(19617208-19617373)
chr3 (94-151)||(19626114-19626171)
[»] chr6 (1 HSPs)
chr6 (51-217)||(18025123-18025290)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 24204012 - 24203789
Alignment:
Q  1 tttttctatctaattctccttgcttttatttaaaaaatacttgtcaaatgagtactatataatgaacttaaagcttgctatccatattacacgaacataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24204012 tttttctatctaattctccttgcttttatttaaaaaatacttgtcaaatgagtactatataatgaacttaaagcttgctatccatattacacgaacataa 24203913  T
Q  101 gataatagagttgaaagataaaattttcacaaaaaatggaaaaacacatttgccaatcttttctcttgggacttttttgcattatggttgtcctggcttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24203912 gataatagagttgaaagataaaattttcacaaaaaatggaaaaacacatttgccaatcttttctcttgggacttttttgcattatggttgtcctggcttc 24203813  T
Q  201 gggtaagaaacatatgatatcttt 224  Q
    ||||||||||||||||||||||||    
T  24203812 gggtaagaaacatatgatatcttt 24203789  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 21604976 - 21605052
Alignment:
Q  107 agagttgaaagataaaattttcacaaaaaatggaaaaacacatttgccaatcttttctcttgggacttttttgcatt 183  Q
    |||||| ||||||||||| |||||||||||||| ||| ||||||| ||||| |||||||||||||||||| ||||||    
T  21604976 agagttcaaagataaaatcttcacaaaaaatggcaaaccacatttcccaatattttctcttgggacttttgtgcatt 21605052  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 12421546 - 12421451
Alignment:
Q  115 aagataaaattttcacaaaaaatggaaaaacacatttgccaatcttttctcttgggacttttttgcattatggttgtcctggcttcgggtaagaaa 210  Q
    ||||| |||| |||||||||||||| || |||| ||| || ||||||||| || |||||||| ||||||  | |||||||||||||||||||||||    
T  12421546 aagatgaaatcttcacaaaaaatggcaacacactttttccgatcttttcttttcggacttttatgcattgcgtttgtcctggcttcgggtaagaaa 12421451  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 207
Target Start/End: Original strand, 21601427 - 21601540
Alignment:
Q  94 aacataagataatagagttgaaagataaaattttcacaaaaaatggaaaaacacatttgccaatcttttctcttgggacttttttgcattatggttgtcc 193  Q
    |||| |||||||||||| |  |||||| ||| ||||||| |||||| |||| | ||||  |||| |||||||||||||||||| ||||||  | | || |    
T  21601427 aacaaaagataatagagctttaagatacaatcttcacaagaaatggcaaaatatatttctcaatattttctcttgggacttttatgcattgcgttggttc 21601526  T
Q  194 tggcttcgggtaag 207  Q
    ||||||||||||||    
T  21601527 tggcttcgggtaag 21601540  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 21611250 - 21611331
Alignment:
Q  131 aaaaaatggaaaaacacatttgccaatcttttctcttgggacttttttgcattatggttgtcctggcttcgggtaagaaaca 212  Q
    ||||||||| ||||||||||| ||||| ||||||||||||| |||| |||||| || || ||||  |||| |||||||||||    
T  21611250 aaaaaatggcaaaacacattttccaatattttctcttgggagttttgtgcattgtgtttctcctatcttcaggtaagaaaca 21611331  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 52 - 217
Target Start/End: Original strand, 19603660 - 19603825
Alignment:
Q  52 gtactatataatgaacttaaagcttgctatccatattacacgaacataagataatagagttgaaagataaaattttcacaaaaaatggaaaaacacattt 151  Q
    ||||||||||||||| || ||| ||| ||| |||||| |  ||||| |  |||||||||||  ||||||||||||| ||||||||||| |||||||||||    
T  19603660 gtactatataatgaagttgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaattttaacaaaaaatggcaaaacacattt 19603759  T
Q  152 gccaatcttttctcttgggacttttttgcattatggttgtcctggcttcgggtaagaaacatatga 217  Q
      |||| ||||||||||||| |||| |||||| || | || || |||| |||||||||||||||||    
T  19603760 cgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaacatatga 19603825  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 217
Target Start/End: Original strand, 19563422 - 19563596
Alignment:
Q  48 atgagtactatataatgaacttaaagcttgctatccatattacacgaacataagataatagagttgaaagataaaa----ttttcac-aaaaaatggaaa 142  Q
    |||||||||||||||||||||| ||| ||| ||| ||||||||  ||||| ||||||||||||||  |||||||||    | ||||| ||||||||| ||    
T  19563422 atgagtactatataatgaacttgaagtttgttattcatattacgagaacaaaagataatagagttctaagataaaagaattcttcacaaaaaaatggcaa 19563521  T
Q  143 aacacatttgccaatcttttctcttgggacttttttgcattatggttgtcctggcttcgggtaagaaacatatga 217  Q
    ||||||||| |||||  | |||||||||| |||| |||||| || |  | || ||||| ||||||||||||||||    
T  19563522 aacacatttcccaatactgtctcttgggaattttatgcattgtgttgattctagcttcaggtaagaaacatatga 19563596  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 48 - 176
Target Start/End: Original strand, 19581337 - 19581466
Alignment:
Q  48 atgagtactatataatgaacttaaagcttgctatccatattacacgaacataagataatagagttgaaagataaaattttcac-aaaaaatggaaaaaca 146  Q
    ||||||||||||||||||| || ||| ||||||| |||||| |  ||||| || ||||||||||   |||||||||||||||| ||||||||| ||||||    
T  19581337 atgagtactatataatgaagttgaagtttgctatgcatattgcgagaacaaaaaataatagagtcttaagataaaattttcacaaaaaaatggcaaaaca 19581436  T
Q  147 catttgccaatcttttctcttgggactttt 176  Q
    ||||| ||| |  |||||||||||| ||||    
T  19581437 catttcccagtactttctcttgggaatttt 19581466  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 19549176 - 19549280
Alignment:
Q  48 atgagtactatataatgaacttaaagcttgctatccatattacacgaacataagataatagagttgaaagataaaattttcac-aaaaaatggaaaaaca 146  Q
    |||||||||||||||||||||| ||| ||| ||| |||||| || ||||| ||||||||||||||  || ||||||| ||||| ||||||||| ||||||    
T  19549176 atgagtactatataatgaacttgaagtttgttattcatatttcaagaacaaaagataatagagttctaaaataaaatcttcacaaaaaaatggcaaaaca 19549275  T
Q  147 cattt 151  Q
    |||||    
T  19549276 cattt 19549280  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 217
Target Start/End: Original strand, 19539007 - 19539181
Alignment:
Q  48 atgagtactatataatgaacttaaagcttgctatccatattacacgaacataagataatagagttgaaagataaaa----ttttcac-aaaaaatggaaa 142  Q
    |||||||||||||||||||||| ||| ||| ||| ||||||||  ||||| ||||||||||||||  |||||||||    | ||||| ||||||||| ||    
T  19539007 atgagtactatataatgaacttgaagtttgttattcatattacgagaacaaaagataatagagttctaagataaaagaattcttcacaaaaaaatggcaa 19539106  T
Q  143 aacacatttgccaatcttttctcttgggacttttttgcattatggttgtcctggcttcgggtaagaaacatatga 217  Q
    ||||||||| ||| |  | |||||| ||| |||| ||||||  | | || || ||||| ||||||||||||||||    
T  19539107 aacacattttccagtactgtctcttaggaattttatgcattgcgttggttctagcttcaggtaagaaacatatga 19539181  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 19612247 - 19612347
Alignment:
Q  115 aagataaaattttcacaaaaaatggaaaaacacatttgccaatcttttctcttgggacttttttgcattatggttgtcctggcttcgggtaagaaacata 214  Q
    |||||||||| |||||||||||||| ||||||||||| ||||| || ||| |||||| |||| ||||||  | | || || ||||| |||||||||||||    
T  19612247 aagataaaatcttcacaaaaaatggcaaaacacatttcccaatattgtcttttgggaattttctgcattgcgttggttctagcttcaggtaagaaacata 19612346  T
Q  215 t 215  Q
    |    
T  19612347 t 19612347  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 136
Target Start/End: Original strand, 19557181 - 19557261
Alignment:
Q  56 tatataatgaacttaaagcttgctatccatattacacgaacataagataatagagttgaaagataaaattttcacaaaaaa 136  Q
    |||||||| ||||| ||| ||| ||| ||||||||  ||||| ||||||||||||||  |||||||||| |||||||||||    
T  19557181 tatataataaacttgaagtttgttattcatattacgagaacaaaagataatagagttctaagataaaatcttcacaaaaaa 19557261  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 213
Target Start/End: Original strand, 19593482 - 19593648
Alignment:
Q  48 atgagtactatataatgaacttaaagcttgctatccatattacacgaacataagataatagagttgaaagataaaattttcac-aaaaaatggaaaaaca 146  Q
    ||||||||||||||||||| || ||| ||||||| |||||| |  ||||| |  |||||||||||    |||||||  ||||| ||||||||| |  |||    
T  19593482 atgagtactatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttggataaaaaattcacaaaaaaatggcaggaca 19593581  T
Q  147 catttgccaatcttttctcttgggacttttttgcattatggttgtcctggcttcgggtaagaaacat 213  Q
    ||||| ||||| ||||||||| ||| |||| ||||||  | | || || ||||| ||||||||||||    
T  19593582 catttcccaatattttctcttaggaattttatgcattgcgttggttctagcttcaggtaagaaacat 19593648  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 183
Target Start/End: Original strand, 19609555 - 19609682
Alignment:
Q  55 ctatataatgaacttaaagcttgctatccatattacacgaacataagataatagagttgaaagataaaattttcacaaaaaatggaaaaacacatttgcc 154  Q
    ||||||||||||||| ||| ||||| | |||||| |   |||| |  ||||||||| |  |||||||||| |||||||||| ||| ||||||||||| ||    
T  19609555 ctatataatgaactttaagtttgctgtgcatattgcgaaaacaaacaataatagagctctaagataaaatcttcacaaaaa-tggcaaaacacatttccc 19609653  T
Q  155 aatcttttctcttgggacttttttgcatt 183  Q
    | | || |||||||||| |||| ||||||    
T  19609654 agtattgtctcttgggaattttatgcatt 19609682  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 19653547 - 19653643
Alignment:
Q  55 ctatataatgaacttaaagcttgctatccatattacacgaacataagataatagagttgaaagataaaattttcacaaaaaatggaaaaacacattt 151  Q
    |||||||||||||||  || || |||| |||||| |   |||| |||||||||||| |  |||||||||| |||| ||||||||| |||||||||||    
T  19653547 ctatataatgaacttggagttttctatgcatattgcgaaaacaaaagataatagagctataagataaaatcttcataaaaaatggcaaaacacattt 19653643  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 215
Target Start/End: Original strand, 19617208 - 19617373
Alignment:
Q  53 tactatataatgaacttaaagcttgctatccatattacacgaacataagataatagagttgaaagataaaattttcacaaaaaa----tggaaaaacaca 148  Q
    ||||||||||||||||| ||| ||||||| |||||| |   |||| | ||||||| | |  ||||||||||| |||| ||||||    ||| |||| | |    
T  19617208 tactatataatgaacttgaagtttgctatgcatattgcgaaaacaaacgataataaactc-aaagataaaatcttcaaaaaaaaaaaatggcaaaatata 19617306  T
Q  149 tttgccaatcttttctcttgggacttttttgcattatggttgtcctggcttcgggtaagaaacatat 215  Q
    ||| ||||| ||||||||| ||| |||| ||||||  | | || || ||||||||||||||||||||    
T  19617307 ttttccaatattttctctttggagttttatgcattgcgttggttctagcttcgggtaagaaacatat 19617373  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 19626114 - 19626171
Alignment:
Q  94 aacataagataatagagttgaaagataaaattttcacaaaaaatggaaaaacacattt 151  Q
    |||| |||||||||||| |  |||||||||| |||| ||||||||| |||||||||||    
T  19626114 aacaaaagataatagagctataagataaaatcttcataaaaaatggcaaaacacattt 19626171  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 217
Target Start/End: Original strand, 18025123 - 18025290
Alignment:
Q  51 agtactatataatgaacttaaagcttgctatccatattacacgaacataagataatagagttgaaagataaaattttcac-aaaaaatggaaaaacacat 149  Q
    |||||||||||||||| |||||| ||| ||| ||||||    ||||| ||||||||||||||  |||||||||| ||||| ||||||||| |||||| ||    
T  18025123 agtactatataatgaatttaaagtttgttattcatattgggagaacaaaagataatagagttctaagataaaatcttcacaaaaaaatggcaaaacatat 18025222  T
Q  150 ttgccaatcttttctcttgggacttttttgcattatggttgtcctggcttcgggtaagaaacatatga 217  Q
    ||  |||| || ||| |||| | |||| ||||||  | | || || || || ||||||||||||||||    
T  18025223 ttctcaatattgtctgttggcaattttatgcattgcgttggttctagcctcaggtaagaaacatatga 18025290  T

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