View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3461_low_6 (Length: 508)
Name: NF3461_low_6
Description: NF3461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3461_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 49424223 - 49423735
Alignment:
| Q |
1 |
tcatcaaaggaatttatgtaaattagttggaattatatttttaaagactactaaattactaatcataaactaagggaatcatcatgaatagacttcaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49424223 |
tcatcaaaggaatttatgtaaattagttggaattatatttttaaagactactaaattactaatcataaactaagggaatcatcatgaatagacttcaaat |
49424124 |
T |
|
| Q |
101 |
caaaagatgaatctagcaaggctcgtggttctggtgcaacttggatggcgcttacggagacttccgttccatggtggtttcatgaatggagtgattatcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49424123 |
caaaagatgaatctagcaaggctcgtggttctggtgcaacttggatggcgcttacggagacttccgttccatggtggtttcatgaatggagcgattatcc |
49424024 |
T |
|
| Q |
201 |
agattactaatgacaggtttgtatcaactgctccttgaatacttagtatgcctgtggagaaccgagaaactcacgtcttataggtctaataaattcaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49424023 |
agattactaatgacaggtttgtatcaactgctccttgaatacttagtatgcctgtggagaaccgagaaactcacgtcttataggtctaataaattcaaaa |
49423924 |
T |
|
| Q |
301 |
aataatggaaatgagaatcaagcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaac |
400 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49423923 |
aataatgg-aatgagaatcaagcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaac |
49423825 |
T |
|
| Q |
401 |
ttaaagatggagatggttgatagattcaactttcaagacattagggataacattttttatgctcgtacaatttcggccattacagatttg |
490 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49423824 |
ttaaagttggagatggttgatagattcaactttcaagacattagggataacattttttatgctcgtacaatttcggccattacagatttg |
49423735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 310 - 457
Target Start/End: Original strand, 43363148 - 43363293
Alignment:
| Q |
310 |
aatgagaatcaagcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagatg |
409 |
Q |
| |
|
|||||||| ||| ||||||| |||||||| || |||||||||||||||||| ||||||| | |||||||||||||| || |||||||| | | | |
|
|
| T |
43363148 |
aatgagaaggaagtttttgaattgtcttaatgagtcatttggggaagcttgtttagtgtttcacttcaattgttcaacaaccagtttaaact--atgtag |
43363245 |
T |
|
| Q |
410 |
gagatggttgatagattcaactttcaagacattagggataacattttt |
457 |
Q |
| |
|
|||||| || |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43363246 |
gagatgattaatagattcaactttcaagacataagggataacattttt |
43363293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 108 - 231
Target Start/End: Original strand, 49416533 - 49416656
Alignment:
| Q |
108 |
tgaatctagcaaggctcgtggttctggtgcaacttggatggcgcttacggagacttccgttccatggtggtttcatgaatggagtgattatccagattac |
207 |
Q |
| |
|
||||||||| |||||| ||| | ||||||| |||||||| | ||||| |||||||||| | | ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
49416533 |
tgaatctagtaaggctgatggatttggtgcagcttggatgacacttacagagacttccgcttcgtggtggtttcatgaacggagtgattatccagattac |
49416632 |
T |
|
| Q |
208 |
taatgacaggtttgtatcaactgc |
231 |
Q |
| |
|
| ||| | ||||||||||||||| |
|
|
| T |
49416633 |
cattgatacgtttgtatcaactgc |
49416656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 321 - 464
Target Start/End: Complemental strand, 49426060 - 49425917
Alignment:
| Q |
321 |
agcttttgaactgtcttaacaagccatttggggaagcttgttcagtgttttaattcaattgttcaaccttcattttaaacttaaagatggagatggttga |
420 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| ||||||||| ||| |||||||| ||||||||| | |||||||| || | ||||||||| | |
|
|
| T |
49426060 |
agcttttgaactgtcttaatgaatcatttggggaaacttgttcagcttttcaattcaatagttcaacctctagtttaaactaaatgtatgagatggttca |
49425961 |
T |
|
| Q |
421 |
tagattcaactttcaagacattagggataacattttttatgctc |
464 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||| ||| |||| |
|
|
| T |
49425960 |
tagtttcaactttcaagacattagggatagcatttcttacgctc |
49425917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 413 - 451
Target Start/End: Complemental strand, 17641030 - 17640992
Alignment:
| Q |
413 |
atggttgatagattcaactttcaagacattagggataac |
451 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17641030 |
atggttgatagattcaactttcaagaatttagggataac |
17640992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 43362976 - 43363025
Alignment:
| Q |
166 |
gttccatggtggtttcatgaatggagtgat--tatccagattactaatga |
213 |
Q |
| |
|
||||||||||||||||||||| | |||||| |||||||||||||||||| |
|
|
| T |
43362976 |
gttccatggtggtttcatgaaagaagtgattatatccagattactaatga |
43363025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University