View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3461_low_7 (Length: 502)
Name: NF3461_low_7
Description: NF3461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3461_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 366
Target Start/End: Original strand, 39853770 - 39854115
Alignment:
| Q |
20 |
tgaacacttgggactgaattgtaagaattttgagacctcaataaccattctaagtgccaacccactttggattgcaactgagnnnnnnntataataaaat |
119 |
Q |
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| T |
39853770 |
tgaacacttgggactgaattgtaagaattttgagacctcaataaccattctaagtgccaacccactttggattgcaactgagaaaaaa-tataataaaat |
39853868 |
T |
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| Q |
120 |
atgacaatggaagtttgcttgtcgtatcatttcctttaataattattaaaaccaatacatagagggaatatgaaaaggaaaatcactaatgtgtcgacca |
219 |
Q |
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| T |
39853869 |
atgacaatggaagtttgcttgtcgtatcatttcctttaataattattaaaaccaatacatagagggaatatgaaaaggaaaatcactaatgtgtcgacca |
39853968 |
T |
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| Q |
220 |
accatttcctaatgcacccactactatcattgtagctttatacatatatcattgacaccaagacctaactaattaaacttatcctgaatttttaaattat |
319 |
Q |
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| T |
39853969 |
accatttcctaatgcacccactactatcattgtagctttatacatatatcattgacaccaagacctaactaattaaacttatcctgaatttttaaattat |
39854068 |
T |
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| Q |
320 |
ttaatgcgtctttttatcttaagtaagtacacaatccaatctaatcc |
366 |
Q |
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| T |
39854069 |
ttaatgcgtctttttatcttaagtaagtacacaatccaatctaatcc |
39854115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 450 - 492
Target Start/End: Original strand, 39854220 - 39854262
Alignment:
| Q |
450 |
gcttcattcgtttattgtctttggcttttcacatacacctatg |
492 |
Q |
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| T |
39854220 |
gcttcattcgtttcttgtctttggcttttcacatacacctatg |
39854262 |
T |
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