View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3461_low_9 (Length: 406)
Name: NF3461_low_9
Description: NF3461
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3461_low_9 |
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| [»] scaffold0429 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 104 - 343
Target Start/End: Complemental strand, 1253403 - 1253164
Alignment:
| Q |
104 |
ctcgtgagattgctaactaattcatttggatgcaacaaaaatacatggaaaaaagtagtcaaatagaaaggttttctcccacgttttctgcttcccttgt |
203 |
Q |
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| T |
1253403 |
ctcgtgagattgctaactaattcatttggatgcaacaaaaatatatggaaaaaagtagtcaaatagaaaggttttctcccacgttttctgcttcccttgt |
1253304 |
T |
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| Q |
204 |
gcagcttaagcgccatcgtgaatgaaaatcactccaccgtcatccatcagcactgtgtctttgttgttcatgaaaactactacaagccctcaccatccct |
303 |
Q |
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| T |
1253303 |
gcagcttaagcgccatcgtgaatgaaaatcactccgccgtcatccaccaccactgtgtctttgttgttcatgaaaactactacaagccctcaccatccct |
1253204 |
T |
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| Q |
304 |
gcttgtcgtatccatcaccgtcatatcgcaactatcatcg |
343 |
Q |
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| T |
1253203 |
gcttgtcgtatccatcaccgtcatatcgcaactaccatcg |
1253164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 1320835 - 1320892
Alignment:
| Q |
17 |
cttggatcatttgccactttaatagtgtacatagaaacatcctcttcataatttagta |
74 |
Q |
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| T |
1320835 |
cttggatcatttgccactttaatagtgtacatagcaacatcctcttcataatttagta |
1320892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 1253484 - 1253423
Alignment:
| Q |
17 |
cttggatcatttgccactttaatagtgtacatagaaacatcctcttcataatttagtatagc |
78 |
Q |
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| T |
1253484 |
cttggatcatttgccactttaattgtgtacattgcaacatcctcttcataatttagtatagc |
1253423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 1264067 - 1264010
Alignment:
| Q |
17 |
cttggatcatttgccactttaatagtgtacatagaaacatcctcttcataatttagta |
74 |
Q |
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| T |
1264067 |
cttggatcatttgccacttttattgtgtacatagcaacatcctcttcataatttagta |
1264010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 1336597 - 1336658
Alignment:
| Q |
17 |
cttggatcatttgccactttaatagtgtacatagaaacatcctcttcataatttagtatagc |
78 |
Q |
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| T |
1336597 |
cttggataatttgccactttaatagtgtacatagcaatatcttcttcataatttagtatagc |
1336658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 1336678 - 1336750
Alignment:
| Q |
104 |
ctcgtgagattgctaactaa-ttcatttggatgcaacaaaaatacatggaaaaaagtagtcaaatagaaaggt |
175 |
Q |
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| T |
1336678 |
ctcgtgagattactaaataaattcatttgaatgcaacaaaaatatatggaaaaaagtagttgaatagaaaggt |
1336750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 179 - 403
Target Start/End: Complemental strand, 48167326 - 48167114
Alignment:
| Q |
179 |
ctcccacgttttctgcttcccttgtgcagcttaagcgccatcgtgaatgaaaatcactccaccgtcatccatcagcactgtgtctttgttgttcatgaaa |
278 |
Q |
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||||||| ||||| |||||||||| ||||||||||||||| | ||||||||||||||||| |||| ||||| || ||| ||||||||||||||||||||| |
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| T |
48167326 |
ctcccacattttcggcttcccttgcgcagcttaagcgccaccatgaatgaaaatcactccgccgtgatccaccaccaccgtgtctttgttgttcatgaaa |
48167227 |
T |
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| Q |
279 |
actactacaagccctcaccatccctgcttgtcgtatccatcaccgtcatatcgcaactatcatcgccgtgatccaccatcatcaccgtcacaccgatgcg |
378 |
Q |
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| T |
48167226 |
a---ctacaatccctcaccatctccgcttgtcgtctccatcaccgtcatatcgcagctatcatcaccgtgatc---------taccgtcacaccgatggg |
48167139 |
T |
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| Q |
379 |
tgtttcctccgccatgatgtttctt |
403 |
Q |
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| T |
48167138 |
tgtttcctccgccatgatgtttctt |
48167114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 179 - 404
Target Start/End: Complemental strand, 46654492 - 46654279
Alignment:
| Q |
179 |
ctcccacgttttctgcttcccttgtgcagcttaagcgccatcgtgaatgaaaatcactccaccgtcatccatcagcactgtgtctttgttgttcatgaaa |
278 |
Q |
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| T |
46654492 |
ctcccacattttcggcttccgttgcgcagcttaagcgccaccatgaatgaaaatcactctgccgtgatccaccaccactgtgtctttgttgttcatgaaa |
46654393 |
T |
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| Q |
279 |
actactacaagccctcaccatccctgcttgtcgtatccatcaccgtcatatcgcaactatcatcgccgtgatccaccatcatcaccgtcacaccgatgcg |
378 |
Q |
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| T |
46654392 |
a---ctacaatccctcaccatctctgcttgtcgtctccatcaccgtcatatcgcagctatcatcaccgtgatc---------taccgtcacaccgatggg |
46654305 |
T |
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| Q |
379 |
tgtttcctccgccatgatgtttcttc |
404 |
Q |
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| T |
46654304 |
tgtttcctccgccataatgtttcttc |
46654279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0429 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0429
Description:
Target: scaffold0429; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 179 - 404
Target Start/End: Complemental strand, 4106 - 3893
Alignment:
| Q |
179 |
ctcccacgttttctgcttcccttgtgcagcttaagcgccatcgtgaatgaaaatcactccaccgtcatccatcagcactgtgtctttgttgttcatgaaa |
278 |
Q |
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|||||| |||||| |||||| ||| ||||||||||||||| |||||||||||||||||| ||| ||||| || ||||||||||||||||||||||||| |
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| T |
4106 |
ctcccatgttttcggcttccgttgcgcagcttaagcgccagcgtgaatgaaaatcactctgtcgtgatccaccaccactgtgtctttgttgttcatgaaa |
4007 |
T |
|
| Q |
279 |
actactacaagccctcaccatccctgcttgtcgtatccatcaccgtcatatcgcaactatcatcgccgtgatccaccatcatcaccgtcacaccgatgcg |
378 |
Q |
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| T |
4006 |
a---ctacaatccctcaccatctctgcttgtcgtctccatcaccgtcatatcacagctatcatcaccgtgatc---------caccgtcacaccgatggg |
3919 |
T |
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| Q |
379 |
tgtttcctccgccatgatgtttcttc |
404 |
Q |
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||||| ||| |||||||||||||||| |
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| T |
3918 |
tgttttctctgccatgatgtttcttc |
3893 |
T |
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