View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3462_high_3 (Length: 411)
Name: NF3462_high_3
Description: NF3462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3462_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 38619204 - 38618799
Alignment:
| Q |
1 |
gggaaataagacattaatcaactgttgcaagtaattaatggaacgtaagtgttgcttnnnnnnncaaagtttagctagttaatttgacatttcagccatt |
100 |
Q |
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| T |
38619204 |
gggaaataagacattaatcaactgttgcaagtaattaatggaacgtaagtgttgcttaaaaaaacaaagtttagctagttaatttgacatttcagccatt |
38619105 |
T |
|
| Q |
101 |
attataaatttattagtgc---------aattaaaatttattgataaaacgtcgttttcttactttcctcccccc-accttcaatacacggtacatagat |
190 |
Q |
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| T |
38619104 |
attataaatttattagtgcttttagtgcaattaaaatttattgataaaacgtcgttttcttactttcctcccccccaccttcaatacacggtacatagat |
38619005 |
T |
|
| Q |
191 |
ttacgtacgtaggtccacgaatgtaccgcatgaatgacagacagacacaagtcgagagtgccatcttttgtgcagccttcaattacatgaattttttatg |
290 |
Q |
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| T |
38619004 |
ttacgtacgtaggtccacgaatgtaccgcatgaatgacagacagacacaagtcgagagtgccatcttttgtgcagccttcaattacatgaattttttatg |
38618905 |
T |
|
| Q |
291 |
ctatttcttgtactaatgttgttgcctgttgggatacaaaaatgcatacgaacggaattgaaccagtcacactcacacgaattgctgaccatacatgggt |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38618904 |
ctatttcttgtactaatgttgttgcctgttgggatacaaaaatgcatacgaacggaattgaaccagtcacactcacacgaattgctaaccatacatgggt |
38618805 |
T |
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| Q |
391 |
ggtttg |
396 |
Q |
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|||||| |
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| T |
38618804 |
ggtttg |
38618799 |
T |
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