View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3462_high_7 (Length: 295)
Name: NF3462_high_7
Description: NF3462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3462_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 34 - 291
Target Start/End: Complemental strand, 12162355 - 12162098
Alignment:
| Q |
34 |
cagttatttaaattcattcnnnnnnntagaagcacgacactacaaggattgaagttcaacactataaagaatattctttttaggggcaccgcaaatattt |
133 |
Q |
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| T |
12162355 |
cagttatttaaattcattcaaaaaaatagaagcacgacactacaaggattgaagttcaacactataaagaatattctttttaggggcaccgcaaatattt |
12162256 |
T |
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| Q |
134 |
tagagttgtatattttacagaactaataagttgtataacatctcagaaatatttgtatatgtatatgtatgcatacgaagttgtatatcttaatgaatgc |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12162255 |
tagagttgtatattttacagaactaataagttgtataacatctcagaaatatttgtatatgtatatgtatgcatacgaagttgtatatcttaatgaatgc |
12162156 |
T |
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| Q |
234 |
atacgttgtagagttgtatatttctaatcggacaacaaaatattgaatgcctttgcta |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12162155 |
atacgttgtagagttgtatatttctaatcggacaacaaaatattgaatgcctttgcta |
12162098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 34 - 291
Target Start/End: Complemental strand, 12406783 - 12406526
Alignment:
| Q |
34 |
cagttatttaaattcattcnnnnnnntagaagcacgacactacaaggattgaagttcaacactataaagaatattctttttaggggcaccgcaaatattt |
133 |
Q |
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| T |
12406783 |
cagttatttaaattcattcaaaaaaatagaagcacgacactacaaggattgaagttcaacactataaagaatattctttttaggggcaccgcaaatattt |
12406684 |
T |
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| Q |
134 |
tagagttgtatattttacagaactaataagttgtataacatctcagaaatatttgtatatgtatatgtatgcatacgaagttgtatatcttaatgaatgc |
233 |
Q |
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| T |
12406683 |
tagagttgtatattttacagaactaataagttgtataacatctcagaaatatttgtatatgtatatgtatgcatacgaagttgtatatcttaatgaatgc |
12406584 |
T |
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| Q |
234 |
atacgttgtagagttgtatatttctaatcggacaacaaaatattgaatgcctttgcta |
291 |
Q |
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| T |
12406583 |
atacgttgtagagttgtatatttctaatcggacaacaaaatattgaatgcctttgcta |
12406526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 74 - 291
Target Start/End: Original strand, 30324169 - 30324380
Alignment:
| Q |
74 |
tacaaggattgaagttcaacactataaagaatattctttttaggggcaccgcaaatattttagagttgtatattttacagaactaataagttgtataaca |
173 |
Q |
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| T |
30324169 |
tacaaggattgaagttcaacactataaagaatattctttttaggggcaccgcaaatattttagagttgtatattttacagaactaataagttgtataaca |
30324268 |
T |
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| Q |
174 |
tctcagaaatatttgtatatgtatatgtatgcatacgaagttgtatatcttaatgaatgcatacgttgtagagttgtatatttctaatcggacaacaaaa |
273 |
Q |
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||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30324269 |
tctcataaatatttgtatatgtata------catacaaagttgtatatcttaatgaatgcatacgttgtagagttgtatatttccaatcggacaacaaaa |
30324362 |
T |
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| Q |
274 |
tattgaatgcctttgcta |
291 |
Q |
| |
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|||||||||| ||||||| |
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| T |
30324363 |
tattgaatgcttttgcta |
30324380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 38617476 - 38617372
Alignment:
| Q |
60 |
tagaagcacgacactacaagg----attgaagttcaacactataaagaatattctttttaggggcaccgcaaatattttagagttgtatattttacagaa |
155 |
Q |
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||||||||| | ||||||||| ||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||| | || |
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| T |
38617476 |
tagaagcacaagactacaaggattaattgaagttcaacactataaatagtattctttttaggggcaccacaaatattttagagttgtatattttataaaa |
38617377 |
T |
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| Q |
156 |
ctaat |
160 |
Q |
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||||| |
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| T |
38617376 |
ctaat |
38617372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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