View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3462_low_1 (Length: 520)
Name: NF3462_low_1
Description: NF3462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3462_low_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 32374187 - 32373935
Alignment:
| Q |
18 |
atatacttgttctaaaacaaaaaatcctacctgatagaattctagcagcacttgcagtataaatctttattcttttaataatcgtatcaaata---tgtt |
114 |
Q |
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| T |
32374187 |
atatacttgttctaagacaaaaaatcctacctcatagaattctagcagcacttgcaatatatatctacattcttttaataatcgtatcaattactatgtt |
32374088 |
T |
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| Q |
115 |
tccagaatgcctttttcnnnnnnnnnnnntaaactatgttttgaggacatttaaacttcttgaagcttttgtagaaaaaacaacttcttgaagctagttc |
214 |
Q |
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| T |
32374087 |
tccagaatgcctttttcaaaaacaaaaaataaactatattttgaggacatttaaacttcttgaagcttttgtaaaaaaaacaacttcttgaagctagttc |
32373988 |
T |
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| Q |
215 |
tattattttccttggtggagacgaggatgatgtgcatatgttaagtggaattt |
267 |
Q |
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| T |
32373987 |
tattattttccttggtggagacgaggatggtgtgcgtatgttaagtggaattt |
32373935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 32373685 - 32373647
Alignment:
| Q |
320 |
gagagagagttcaaagcacttggtgaaaatgtgttgttt |
358 |
Q |
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| T |
32373685 |
gagagagagttcaaagcacttggtgaaaatgtgctgttt |
32373647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 429 - 520
Target Start/End: Original strand, 12157813 - 12157904
Alignment:
| Q |
429 |
atatcaatatacgtgtgaaaacaaaaatctaatacgatcaaaatatcgacatacctgtctaaactttgtagttccctcgactgcctcagtaa |
520 |
Q |
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| T |
12157813 |
atatcaatagacgtgtgaaaacaaaaatctaatacgatcaaaatatcatcatacatgtttaaactttgtagtatccttgactgcctctgtaa |
12157904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 7499715 - 7499599
Alignment:
| Q |
17 |
catatacttgttctaaaacaaaaaatcctacctgatagaattctagcagcacttgcagtataaatctttattcttttaataatcgtatca---aatatgt |
113 |
Q |
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||||||| ||||||| ||||||||||| || |||||||||| |||||||||||||| | ||||||| |||| ||||||||| ||||| | ||||| |
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| T |
7499715 |
catatacatgttctagaacaaaaaatcttatttgatagaattgtagcagcacttgcaatgtaaatctacattcaattaataatcatatcaattactatgt |
7499616 |
T |
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| Q |
114 |
ttccagaatgccttttt |
130 |
Q |
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| T |
7499615 |
ttctagaatgccttttt |
7499599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 7499557 - 7499489
Alignment:
| Q |
199 |
ttcttgaagctagttctattattttccttggtggagacgaggatgatgtgcatatgttaagtggaattt |
267 |
Q |
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| T |
7499557 |
ttcttgaagctagttctattcttttccttggtagaggctaggatggtgtgtgtatgttaagtggaattt |
7499489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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