View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3462_low_10 (Length: 250)
Name: NF3462_low_10
Description: NF3462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3462_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 33771325 - 33771565
Alignment:
| Q |
1 |
ccgccaatatggtcttgtagaagaattgtcatgaagtcaccatcagtgtgatttgaagctcccatagttaattcaggttcaggacatggaggatagtagt |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33771325 |
ccgccaatacggtcttgtagaagaattgtcatgaagtcaccatcagtgtgatttgaagctcccatagttaattcaggttcaggacatggaggatagtagt |
33771424 |
T |
|
| Q |
101 |
gacacgcaataaaatgtccatttggtgaggccagtttcttaaggtaagaaggatccaggcctaaagcttctgagaataactcaaagaatgtaaagcctaa |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33771425 |
gacacgcaataaaatgtccatttggtgaggccaatttcttaaggtaagaaggatccaggcctaaagcttctgagaatatctcaaagaatgtaaagcctaa |
33771524 |
T |
|
| Q |
201 |
atctcttactttcttcgaatattcaatcacaatgtctctgc |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
33771525 |
atctcttactttcttcgaatattcaatcacaatgtctctgc |
33771565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 33768495 - 33768726
Alignment:
| Q |
10 |
tggtcttgtagaagaattgtcatgaagtcaccatcagtgtgatttgaagctcccatagttaattcaggttcaggacatggaggatagtagtgacacgcaa |
109 |
Q |
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|||||||||||||||||||||||||| ||| ||| ||||| || |||| ||||||||||||||| |||||||| ||||||||||||||||||||| || |
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| T |
33768495 |
tggtcttgtagaagaattgtcatgaaatcaatatcggtgtgcttagaagttcccatagttaattcgggttcagggcatggaggatagtagtgacacaaaa |
33768594 |
T |
|
| Q |
110 |
taaaatgtccatttggtgaggccagtttcttaaggtaagaaggatccaggcctaaagcttctgagaataactcaaagaatgtaaagcctaaatctcttac |
209 |
Q |
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| T |
33768595 |
gaaattgtccatagtctaaggccaaatctttaagataagaaggatgaaggcctaaagcttctgagaatagctcaaagattgtcaagcctaaagctcttac |
33768694 |
T |
|
| Q |
210 |
tttcttcgaatattcaatcacaatgtctctgc |
241 |
Q |
| |
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|||||| ||||||||||||||||||||||||| |
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| T |
33768695 |
tttctttgaatattcaatcacaatgtctctgc |
33768726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 33761895 - 33762132
Alignment:
| Q |
4 |
ccaatatggtcttgtagaagaattgtcatgaagtcaccatcagtgtgatttgaagctcccatagttaattcaggttcaggacatggaggatagtagtgac |
103 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| ||| ||||| || |||| ||||||||||||||| |||||||| |||| |||||||||||||| |
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| T |
33761895 |
ccaatctggtcttgtagaagaattgtcatgaaatcaatatcggtgtgcttcgaagttcccatagttaattcgggttcagggcatgcaggatagtagtgac |
33761994 |
T |
|
| Q |
104 |
acgcaataaaatgtccatttggtgaggccagtttcttaaggtaagaaggatccaggcctaaagcttctgagaataactcaaagaatgtaaagcctaaatc |
203 |
Q |
| |
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|| || ||| ||||||| || |||| || ||| |||| |||||||||| |||||||||||||||||| ||| |||||||| ||||| ||||||| | |
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| T |
33761995 |
acagaagaaattgtccatatgttgagagcaattttgtaagataagaaggatgaaggcctaaagcttctgagtatagctcaaagattgtaaggcctaaagc |
33762094 |
T |
|
| Q |
204 |
tcttactttcttcgaatattcaatcacaatgtctctgc |
241 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||| |
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| T |
33762095 |
ccttactttctttgaatattcaatcacaatgtctctgc |
33762132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 28690605 - 28690708
Alignment:
| Q |
1 |
ccgccaatatggtcttgtagaagaattgtcatgaagtcaccatcagtgtgatttgaagctcccatagttaattcaggttcaggacatggaggatagtagt |
100 |
Q |
| |
|
||||||||||| ||||| | ||| || || ||||||||| || |||||||| | | ||||||||||||||||||||||||||||||||| || |||| |
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| T |
28690605 |
ccgccaatatgatcttgcaaaagtatagttatgaagtcattgtctgtgtgattggtatttcccatagttaattcaggttcaggacatggagggtaatagt |
28690704 |
T |
|
| Q |
101 |
gaca |
104 |
Q |
| |
|
|||| |
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|
| T |
28690705 |
gaca |
28690708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 49464365 - 49464458
Alignment:
| Q |
10 |
tggtcttgtagaagaattgtcatgaagtcaccatcagtgtgatttgaagctcccatagttaattcaggttcaggacatggaggatagtagtgac |
103 |
Q |
| |
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|||||||||||||| | ||||||||||| || |||||| || |||| || ||||||||||| ||||||||||| || || |||||| |||||| |
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| T |
49464365 |
tggtcttgtagaagtaatgtcatgaagttactatcagtatgctttgtagtgcccatagttaactcaggttcagggcacggtggatagcagtgac |
49464458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 19846097 - 19846022
Alignment:
| Q |
28 |
gtcatgaagtcaccatcagtgtgatttgaagctcccatagttaattcaggttcaggacatggaggatagtagtgac |
103 |
Q |
| |
|
|||||||||| ||||||||| || ||| | | ||||||||||||||||||||||| ||||| ||| ||||||||| |
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| T |
19846097 |
gtcatgaagttaccatcagtatgttttccaacacccatagttaattcaggttcagggcatggcggaaagtagtgac |
19846022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 19845981 - 19845884
Alignment:
| Q |
144 |
gtaagaaggatccaggcctaaagcttctgagaataactcaaagaatgtaaagcctaaatctcttactttcttcgaatattcaatcacaatgtctctgc |
241 |
Q |
| |
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|||||||||||| || |||| || ||||| || |||||||||| | | || |||||||| |||| ||||| ||||||||||||||||| ||||||| |
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| T |
19845981 |
gtaagaaggatcaagtcctactgcctctgacaacaactcaaagattctgaaacctaaatcacttattttctgtgaatattcaatcacaatatctctgc |
19845884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 19891020 - 19890978
Alignment:
| Q |
61 |
cccatagttaattcaggttcaggacatggaggatagtagtgac |
103 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||| |
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| T |
19891020 |
cccatagttaattcaggttcaggacatgctggatagtaatgac |
19890978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 1094218 - 1094176
Alignment:
| Q |
61 |
cccatagttaattcaggttcaggacatggaggatagtagtgac |
103 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| |||||| |
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|
| T |
1094218 |
cccatagttaattcaggttcagggcatggtggatagaagtgac |
1094176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 95
Target Start/End: Complemental strand, 26171068 - 26170986
Alignment:
| Q |
13 |
tcttgtagaagaattgtcatgaagtcaccatcagtgtgatttgaagctcccatagttaattcaggttcaggacatggaggata |
95 |
Q |
| |
|
|||||||||| ||||||||||| || ||||||||| | || || ||||| ||||||||||||||||||||||| ||||| |
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| T |
26171068 |
tcttgtagaactattgtcatgaaagcaggatcagtgtgtgtggacgcacccatggttaattcaggttcaggacatggtggata |
26170986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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