View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3462_low_14 (Length: 237)
Name: NF3462_low_14
Description: NF3462
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3462_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 69 - 222
Target Start/End: Original strand, 25999320 - 25999478
Alignment:
| Q |
69 |
tatgtaaattgaatctgagatcacggaggaaatgagtatagttgtaatttttagtatttgtaattctattaaaatataggtttagttctttgcattgaga |
168 |
Q |
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| T |
25999320 |
tatgtaaattgaatctgagctcacggaagaaatgagtatagtagtaatttttaatatttgcaattctattaaaatataggtttagttctttgcattgaga |
25999419 |
T |
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| Q |
169 |
gatgttac-----ttttatgtagcaagaacatatgcagaccaatctagtctgtttgtac |
222 |
Q |
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| T |
25999420 |
gatgttactatcttgttatgtagcaagaatatatgcagaccgatcttgtctgtttgtac |
25999478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 69 - 204
Target Start/End: Original strand, 26099112 - 26099252
Alignment:
| Q |
69 |
tatgtaaattgaatctgagatcacggaggaaatgagtatagttgtaatttttagtatttgtaattctattaaaatataggtttagttctttgcattgaga |
168 |
Q |
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||||||||||||||||||| ||||||| |||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26099112 |
tatgtaaattgaatctgagctcacggaagaaatgagtatagtagtaatttttaatattttcaattctattaaaatataggtttagttctttgcattgaga |
26099211 |
T |
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| Q |
169 |
gatgttac-----ttttatgtagcaagaacatatgcagacc |
204 |
Q |
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| T |
26099212 |
gatgttactatcttgttatgtagcaagagcatatgcagacc |
26099252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 26099256 - 26099299
Alignment:
| Q |
179 |
ttatgtagcaagaacatatgcagaccaatctagtctgtttgtac |
222 |
Q |
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| T |
26099256 |
ttatatagcaagaacatatgcagaccgatcttgtctgtttgtac |
26099299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 73 - 222
Target Start/End: Original strand, 33856053 - 33856207
Alignment:
| Q |
73 |
taaattgaatctgagatcacggaggaaatgagtatagttgtaatttttagtatttgtaattctattaaaatataggtttagttctttgcattgagagatg |
172 |
Q |
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||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33856053 |
taaattgaatctgagctcacggaagaaatgagtatagtagtaatttttaatatttgcaattctattaaaatataggtttagttctttgcattgagagatg |
33856152 |
T |
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| Q |
173 |
ttac-----ttttatgtagcaagaacatatgcagaccaatctagtctgtttgtac |
222 |
Q |
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|||| | ||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
33856153 |
ttactatcttgttatgtagcaagaacatatgcagactgatcttgtctgtttgtac |
33856207 |
T |
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